# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1v8aA	265	9.355	c.72.1.2	100494
2fv7A	331	11.20	c.72.1.1	134197
1gvfA	286	12.23	c.1.10.2	70599
3cxjA	165	12.94		
1ekqA	272	14.67	c.72.1.2	34941
1rkd	309	15.50		
2inbA	140	18.62		
3pviA	157	19.09	c.52.1.6	33300
1x31B	404	19.11		
2d29A	387	19.52	a.29.3.1,e.6.1.1	131157,131158
1ob8A	135	19.64	c.52.1.18	111627
2rb9A	334	21.66		
1cliA	345	25.34	d.79.4.1,d.139.1.1	39816,41459
2v9yA	334	25.68		
2c81A	418	27.32		
2nwhA	317	32.62		
2po1B	277	35.08		
2gar	212	36.56		
1meoA	209	38.12	c.65.1.1	79035
1i4nA	251	39.28	c.1.2.4	71114
1ryiA	382	40.94	c.3.1.2,d.16.1.3	118813,118814
2abqA	306	43.60	c.72.1.1	126528
2afbA	351	44.70	c.72.1.1	126674
2okfA	140	45.27		
1byrA	155	46.83	d.136.1.1	41450
1geeA	261	47.48	c.2.1.2	90509
1gcoA	261	48.14	c.2.1.2	29884
2pg0A	385	50.49		
1rkdA	309	50.79	c.72.1.1	34928
2jg1A	330	52.26		
2pkfA	334	55.26		
1frpA	335	56.48	e.7.1.1	42875
1x7gA	261	58.91	c.2.1.2	114929
2f02A	323	61.23	c.72.1.1	132649
1drw	273	61.48		
1gefA	123	61.85	c.52.1.18	60465
1srqA	341	62.07	e.55.1.1	105967
1xi3A	215	63.09	c.1.3.1	109601
1o5iA	249	63.19	c.2.1.2	92499
1bdbA	277	66.20	c.2.1.2	29874
2ab0A	205	69.51	c.23.16.2	126501
1aq0A	306	69.89	c.1.8.3	28842
2pviA	157	71.91	c.52.1.6	33302
2zatA	260	72.14		
2a9sA	171	72.51	c.51.5.1	126448
1ub0A	258	74.04	c.72.1.2	88394
2dm6A	333	74.54	b.35.1.2,c.2.1.1	131567,131568
1x1tA	260	78.29	c.2.1.2	121597
1zk4A	251	79.97	c.2.1.2	125176
1u8vA	490	80.58	a.29.3.1,e.6.1.1	113196,113197
1x31C	206	83.70		
1pwxA	254	84.66	c.2.1.2	95262
2p91A	285	85.03		
1pe1A	267	86.01	c.1.10.4	94591
2ew8A	249	89.53	c.2.1.2	132447