# List of top-scoring protein chains for T0493.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2is6A	680	5.97e-16		
1pjrA	724	1.62e-14	c.37.1.19,c.37.1.19	32391,32392
1uaaA	673	3.43e-14	c.37.1.19,c.37.1.19	32401,32402
2pjrB	95	5.28e-14		
1qhhD	169	8.38e-14		
1w36B	1180	4.03e-06	c.37.1.19,c.37.1.19,c.52.1.24	114122,114123,114124
1qhhB	273	6.77e-06		
2pjrA	548	7.17e-06	c.37.1.19,c.37.1.19	32395,32396
1w36D	608	9.15e-05	c.37.1.19,c.37.1.19	114128,114129
1w36C	1122	0.6709	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
2p6nA	191	1.283		
2gk6A	624	2.118		
2f7vA	369	2.487		
2fprA	176	9.903	c.108.1.19	133919
1p0fA	373	10.48	b.35.1.2,c.2.1.1	87642,87643
2ywqA	105	11.05		
2fxaA	207	14.81	a.4.5.28	134304
2cu0A	486	19.24		
2cp2A	95	24.38	b.34.10.1	130690
2eq5A	228	24.53		
1xgyH	219	30.23	b.1.1.2	121985
2gclA	261	30.36	b.55.1.10	134991
1il1A	219	30.48	b.1.1.1,b.1.1.2	62539,62540
2j0uA	374	35.57		
1tcfA	159	36.23	a.39.1.5	17250
2gcjA	261	39.20	b.55.1.10	134987
1vpvA	300	39.50	c.119.1.1	113975
1mgpA	313	40.46	c.119.1.1	79098
1a2xA	159	41.66	a.39.1.5	17251
12e8H	221	42.41	b.1.1.1,b.1.1.2	20269,21269
2cp5A	141	43.45	b.34.10.1	130692
8fabB	224	43.85	b.1.1.1,b.1.1.2	19773,20883
2qr7A	342	44.67		
2gsiB	221	48.26		
1zlsH	224	51.74	b.1.1.1,b.1.1.2	125255,125256
1op3H	225	51.87	b.1.1.1,b.1.1.2	87208,87209
2hxyA	391	52.02		
1v1aA	309	52.03	c.72.1.1	100249
2vl5A	218	56.25		
1s5jA	847	57.51	c.55.3.5,e.8.1.1	112040,112041
2j0sA	410	60.48	c.37.1.19,c.37.1.19	137913,137914
2hyiC	413	60.64	c.37.1.19,c.37.1.19	136892,136893
2iufA	688	61.60		
1iicA	422	62.49	d.108.1.2,d.108.1.2	62422,62423
1dqlH	123	62.91	b.1.1.1	19829
2p6eA	455	67.81		
1i3gH	121	70.76	b.1.1.1	66018
2a9oA	120	71.53	c.23.1.1	126444
2c1oB	218	73.52		
2c1pB	217	73.92		
1cr9H	217	74.50	b.1.1.1,b.1.1.2	20431,21401
1j1gA	190	77.04	d.124.1.1	83976
1j1fA	191	79.80	d.124.1.1	83975
1y8aA	332	80.27		
1v9hA	197	81.14	d.124.1.1	113582
1aw9A	216	81.85	a.45.1.1,c.47.1.5	17736,33030
1m8aA	70	83.26	d.9.1.1	74579
1zfjA	491	84.34	c.1.5.1,d.37.1.1,d.37.1.1	28638,38540,38541
2ealA	148	84.51		
2yy1A	160	84.52		
1plgH	215	84.83	b.1.1.1,b.1.1.2	20081,21113
2p06A	114	89.64	a.204.1.3	139452