# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 5.00e-14 1uaaA 673 9.15e-14 c.37.1.19,c.37.1.19 32401,32402 1pjrA 724 1.12e-13 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 3.17e-13 1w36B 1180 4.93e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 1.05e-10 1w36C 1122 2.24e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 3.90e-07 1w36D 608 1.16e-06 c.37.1.19,c.37.1.19 114128,114129 2v1xA 591 2.124 1m6nA 802 3.306 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1tf5A 844 4.793 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1d2mA 665 6.576 c.37.1.19,c.37.1.19 32417,32418 2g7zA 282 7.515 2qv6A 268 7.799 2bmfA 451 8.227 c.37.1.14,c.37.1.14 128791,128792 2oe3A 114 9.640 2ps1A 226 10.04 2e0qA 104 10.73 2j0eA 266 11.91 2iwtA 125 13.14 1lu4A 136 13.41 c.47.1.10 91124 2vm1A 118 13.99 1c4oA 664 14.01 c.37.1.19,c.37.1.19 32415,32416 1hv8A 367 14.10 c.37.1.19,c.37.1.19 32405,32406 2bkwA 385 15.69 c.67.1.3 128714 2ifqA 105 19.26 c.47.1.1 137343 1lt8A 406 19.74 c.1.26.1 78186 2vluA 122 19.96 1qhhA 167 20.02 c.37.1.19 32393 1wmjA 130 21.56 1ro2A 216 21.82 d.264.1.2 97665 2c2aA 258 22.12 a.30.2.1,d.122.1.3 129662,129663 1ro0A 216 22.22 d.264.1.2 97664 1gm5A 780 23.07 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1dujA 187 23.41 d.135.1.1 41449 2f21A 162 23.76 b.72.1.1,d.26.1.1 132793,132794 2fshA 853 23.91 1l0bA 229 25.10 c.15.1.3,c.15.1.3 73391,73392 1t5iA 172 26.86 c.37.1.19 106450 1pzxA 289 28.99 c.119.1.1 95484 1vchA 175 29.18 c.61.1.1 119980 1klqA 197 30.69 d.135.1.1 68689 2dt8A 280 30.70 1kq6A 141 30.91 d.189.1.1 91020 2v8oA 444 31.36 1nofA 383 31.66 b.71.1.2,c.1.8.3 92020,92021 2f51A 118 32.81 3cssA 267 34.26 2qb7A 397 35.22 1dkuA 317 35.66 c.61.1.2,c.61.1.2 34118,34119 2cx7A 130 35.97 2vfxA 206 36.57 2vdaA 828 37.87 2p62A 241 38.18 1y0bA 197 40.64 c.61.1.1 122476 1jh6A 189 40.98 d.61.1.1 66707 1mgpA 313 41.32 c.119.1.1 79098 1a98A 152 41.76 c.61.1.1 34021 1x7dA 350 42.67 c.2.1.13 114927 1zzoA 136 44.00 c.47.1.10 125913 1i3jA 116 44.08 d.285.1.1 61594 3ch7A 266 45.77 2gzmA 267 46.77 1jetA 517 47.65 c.94.1.1 35718 2eq5A 228 47.84 1vpvA 300 49.18 c.119.1.1 113975 2dskA 311 49.35 1go4A 205 50.95 d.135.1.1 70292 1tuoA 464 52.24 2gebA 185 53.53 1nswA 105 55.08 c.47.1.1 92097 2vvtA 290 56.56 2f9sA 151 58.29 c.47.1.10 133168 1ksiB 642 61.59 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 2z83A 459 62.58 1n57A 291 66.01 c.23.16.2 85328 1st9A 143 66.65 c.47.1.10 98987 2j23A 121 67.16 1oaa 259 67.71 1dbrA 231 68.60 c.61.1.1 34041 2bi7A 384 69.32 1mp4A 292 71.08 c.68.1.6 79376 1kngA 156 71.49 c.47.1.10 72777 1txjA 171 72.51 b.88.1.2 107424 1uekA 275 75.86 d.14.1.5,d.58.26.5 88483,88484 2p06A 114 79.98 a.204.1.3 139452 1xm9A 457 80.19 a.118.1.24 122142 1pvtA 238 82.08 c.74.1.1 95189 2i4iA 417 83.45 1t00A 112 83.86 1h5rA 293 83.86 c.68.1.6 65623 2jfzA 255 84.21 1jfuA 186 84.62 c.47.1.10 62940 1pnoA 180 84.95 c.31.1.4 94953 1thx 115 88.26 1o57A 291 88.80 a.4.5.40,c.61.1.1 92483,92484