# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 6.73e-14 1uaaA 673 7.63e-14 c.37.1.19,c.37.1.19 32401,32402 1pjrA 724 1.14e-13 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 2.85e-13 1w36B 1180 6.40e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 8.60e-12 1w36C 1122 1.26e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 2.74e-07 1w36D 608 8.70e-07 c.37.1.19,c.37.1.19 114128,114129 2v1xA 591 2.568 1d2mA 665 4.071 c.37.1.19,c.37.1.19 32417,32418 1m6nA 802 4.415 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1lu4A 136 5.285 c.47.1.10 91124 2g7zA 282 5.840 2bmfA 451 7.266 c.37.1.14,c.37.1.14 128791,128792 2bkwA 385 8.348 c.67.1.3 128714 1tf5A 844 8.510 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2qv6A 268 10.46 2iwtA 125 11.00 1kngA 156 14.39 c.47.1.10 72777 1kq6A 141 15.21 d.189.1.1 91020 1zzoA 136 17.92 c.47.1.10 125913 1hv8A 367 18.34 c.37.1.19,c.37.1.19 32405,32406 2cx7A 130 19.90 2ps1A 226 21.55 1c4oA 664 25.43 c.37.1.19,c.37.1.19 32415,32416 2ifqA 105 27.04 c.47.1.1 137343 2vluA 122 28.10 1st9A 143 28.57 c.47.1.10 98987 2qb7A 397 29.51 2vfxA 206 29.87 1qhhA 167 30.52 c.37.1.19 32393 2vm1A 118 30.73 2p62A 241 31.94 1jetA 517 32.65 c.94.1.1 35718 1dujA 187 32.84 d.135.1.1 41449 1dkuA 317 34.09 c.61.1.2,c.61.1.2 34118,34119 2b1kA 168 34.27 2dt8A 280 34.67 1t5iA 172 36.59 c.37.1.19 106450 2jbhA 225 36.85 2f21A 162 37.16 b.72.1.1,d.26.1.1 132793,132794 2f9sA 151 37.51 c.47.1.10 133168 1klqA 197 37.69 d.135.1.1 68689 1t00A 112 38.67 1mgpA 313 38.92 c.119.1.1 79098 2v8oA 444 40.99 1lfpA 249 41.67 e.39.1.1 73885 1ksiB 642 41.80 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1l0bA 229 44.85 c.15.1.3,c.15.1.3 73391,73392 1ro0A 216 46.04 d.264.1.2 97664 1wmjA 130 47.62 1qk8A 146 48.62 c.47.1.10 33061 2fshA 853 48.64 2vvtA 290 48.69 1go4A 205 49.02 d.135.1.1 70292 1x7dA 350 49.12 c.2.1.13 114927 1y0bA 197 49.65 c.61.1.1 122476 1vchA 175 50.22 c.61.1.1 119980 3ch7A 266 50.45 2oe3A 114 53.11 2z83A 459 54.00 1vpvA 300 55.18 c.119.1.1 113975 2e0qA 104 55.62 2j23A 121 56.25 3cssA 267 56.57 2gzmA 267 57.64 1jfuA 186 58.01 c.47.1.10 62940 2j0eA 266 58.41 1ewxA 146 58.54 c.47.1.10 33062 2h30A 164 59.25 1ro2A 216 59.27 d.264.1.2 97665 1i5gA 144 60.27 c.47.1.10 61784 1gt7A 274 62.01 c.74.1.1 70398 1xm9A 457 64.18 a.118.1.24 122142 2f51A 118 65.07 2vdaA 828 65.97 1gm5A 780 68.63 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1a98A 152 69.11 c.61.1.1 34021 1gd5A 130 71.08 d.189.1.1 60439 1txjA 171 71.34 b.88.1.2 107424 1e6bA 221 71.92 a.45.1.1,c.47.1.5 59294,59295 1pzxA 289 72.68 c.119.1.1 95484 1thx 115 73.33 2uuuA 584 73.35 1tuoA 464 76.19 1n57A 291 77.47 c.23.16.2 85328 2eq5A 228 77.83 1f5sA 211 81.08 c.108.1.4 59656 2dclA 127 81.85 1i3jA 116 82.47 d.285.1.1 61594 1uekA 275 83.55 d.14.1.5,d.58.26.5 88483,88484 3bt7A 369 85.52 1b74A 254 88.44 c.78.2.1,c.78.2.1 35264,35265 3cc6A 281 89.10