# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 4.03e-14 1uaaA 673 7.11e-14 c.37.1.19,c.37.1.19 32401,32402 1pjrA 724 7.16e-14 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 2.61e-13 1w36B 1180 6.48e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 1.11e-11 2gk6A 624 1.54e-07 1w36C 1122 2.43e-07 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 2.89e-06 c.37.1.19,c.37.1.19 114128,114129 2v1xA 591 1.084 1tf5A 844 1.466 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2iwtA 125 1.492 1d2mA 665 1.818 c.37.1.19,c.37.1.19 32417,32418 1m6nA 802 1.882 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1lu4A 136 2.348 c.47.1.10 91124 1wmjA 130 3.183 1hv8A 367 3.363 c.37.1.19,c.37.1.19 32405,32406 1gm5A 780 3.555 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 2bkwA 385 3.938 c.67.1.3 128714 2vm1A 118 3.979 1vpvA 300 4.602 c.119.1.1 113975 2ps1A 226 4.681 2vluA 122 4.761 2oe3A 114 5.268 2b5eA 504 5.959 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1st9A 143 7.827 c.47.1.10 98987 1pzxA 289 7.981 c.119.1.1 95484 2fshA 853 8.947 1vchA 175 9.291 c.61.1.1 119980 1mgpA 313 9.480 c.119.1.1 79098 2f9sA 151 9.770 c.47.1.10 133168 2dt8A 280 10.15 1c4oA 664 10.25 c.37.1.19,c.37.1.19 32415,32416 2g7zA 282 10.28 2fphX 165 10.86 2qv6A 268 12.12 2p62A 241 12.18 1gt7A 274 12.56 c.74.1.1 70398 1jfuA 186 13.30 c.47.1.10 62940 2vfxA 206 14.09 2vdaA 828 14.84 1t5iA 172 15.17 c.37.1.19 106450 2bmfA 451 17.37 c.37.1.14,c.37.1.14 128791,128792 2v8oA 444 18.55 2ifqA 105 18.58 c.47.1.1 137343 2db3A 434 18.72 1zzoA 136 20.31 c.47.1.10 125913 2z83A 459 21.41 1lt8A 406 21.97 c.1.26.1 78186 1ksiB 642 23.70 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 2nxcA 254 25.10 c.66.1.39 138739 2e0qA 104 25.88 2hjvA 163 27.12 2c2aA 258 29.19 a.30.2.1,d.122.1.3 129662,129663 1ojrA 274 30.52 c.74.1.1 93147 2ozvA 260 31.18 1kngA 156 32.46 c.47.1.10 72777 1xcbA 211 33.03 a.4.5.38,c.2.1.12 109552,109553 3cssA 267 33.27 2cb9A 244 33.41 1oywA 523 34.02 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1c3oA 1073 34.16 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18562,31491,31681,31682,41526,41527 1ro0A 216 34.69 d.264.1.2 97664 2f51A 118 35.11 1ro2A 216 36.33 d.264.1.2 97665 2i4iA 417 36.66 1rifA 282 38.15 c.37.1.23 97507 2gukA 120 38.69 1qk8A 146 39.50 c.47.1.10 33061 1go4A 205 40.82 d.135.1.1 70292 1y0bA 197 42.43 c.61.1.1 122476 1dujA 187 42.44 d.135.1.1 41449 1klqA 197 42.55 d.135.1.1 68689 1tlfA 301 44.28 c.93.1.1 35687 1qhhA 167 45.10 c.37.1.19 32393 1el6A 219 45.87 d.182.1.1 42606 2va8A 715 45.96 1fukA 165 46.94 c.37.1.19 32409 1nktA 922 47.14 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1iyeA 309 47.18 e.17.1.1 83786 1a7j 290 47.37 1l1qA 186 47.98 c.61.1.1 77653 2ywiA 196 48.34 2eq5A 228 52.25 1a98A 152 53.01 c.61.1.1 34021 1kllA 130 53.18 d.32.1.2 72720 1jqgA 433 53.65 c.56.5.1,d.58.3.1 71791,71792 1l0bA 229 57.34 c.15.1.3,c.15.1.3 73391,73392 1eejA 216 57.96 c.47.1.9,d.17.3.1 33057,38071 3ch7A 266 59.79 1thx 115 60.57 1z63A 500 61.07 c.37.1.19,c.37.1.19 124502,124503 3bofA 566 62.91 2j0eA 266 63.71 1t00A 112 64.60 2dskA 311 66.38 2v9lA 274 66.39 1svyA 114 66.68 d.109.1.1 40831 2cx4A 164 67.01 c.47.1.10 130973 2i4aA 107 69.89 2uuuA 584 70.85 2pyyA 228 72.37 1o57A 291 72.37 a.4.5.40,c.61.1.1 92483,92484 2ctc 307 74.96 1wn2A 121 75.28 1oroA 213 76.17 c.61.1.1 34093 1kq6A 141 77.68 d.189.1.1 91020 2ggsA 273 77.76 1qvaA 223 77.87 c.37.1.19 32411 1uekA 275 78.35 d.14.1.5,d.58.26.5 88483,88484 1w4vA 119 78.41 1f5sA 211 78.55 c.108.1.4 59656 2gh9A 386 79.30 2qvpA 275 79.46 1yksA 440 80.85 c.37.1.14,c.37.1.14 123561,123562 1e8gA 560 81.14 d.58.32.1,d.145.1.1 39455,41718 1i5gA 144 82.01 c.47.1.10 61784 1m4lA 307 84.10 c.56.5.1 78604 1e4cP 215 84.27 c.74.1.1 34969 2h30A 164 84.93 1jh6A 189 84.99 d.61.1.1 66707 2ebn 289 85.39 1nswA 105 85.46 c.47.1.1 92097 1euaA 213 89.25 c.1.10.1 29155