# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 1.34e-14 1pjrA 724 3.51e-14 c.37.1.19,c.37.1.19 32391,32392 1uaaA 673 5.60e-14 c.37.1.19,c.37.1.19 32401,32402 1pjr 724 1.26e-13 1w36B 1180 2.04e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 2.74e-11 1w36C 1122 1.78e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 8.23e-07 c.37.1.19,c.37.1.19 114128,114129 2gk6A 624 1.29e-06 2g7zA 282 2.324 2qv6A 268 2.405 2iwtA 125 2.415 2vluA 122 4.048 2oe3A 114 4.245 2vm1A 118 5.330 2v1xA 591 5.334 1d2mA 665 6.812 c.37.1.19,c.37.1.19 32417,32418 2c2aA 258 7.891 a.30.2.1,d.122.1.3 129662,129663 2ifqA 105 8.252 c.47.1.1 137343 1t5iA 172 8.704 c.37.1.19 106450 1m6nA 802 9.394 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2f51A 118 10.01 1pzxA 289 10.72 c.119.1.1 95484 2dt8A 280 11.33 1mgpA 313 11.66 c.119.1.1 79098 2j0eA 266 11.95 2e0qA 104 12.53 1vpvA 300 13.28 c.119.1.1 113975 1jetA 517 13.55 c.94.1.1 35718 2bkwA 385 14.47 c.67.1.3 128714 1tf5A 844 15.24 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2p62A 241 16.72 1l0bA 229 17.22 c.15.1.3,c.15.1.3 73391,73392 2ps1A 226 18.92 1oroA 213 19.26 c.61.1.1 34093 1ksiB 642 20.38 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1lu4A 136 20.99 c.47.1.10 91124 3cssA 267 24.58 2f21A 162 27.46 b.72.1.1,d.26.1.1 132793,132794 1ro0A 216 27.67 d.264.1.2 97664 1zzoA 136 28.82 c.47.1.10 125913 3ch7A 266 31.85 1qq9A 284 36.37 c.56.5.4 33841 1jftA 340 36.53 a.35.1.5,c.93.1.1 66652,66653 1t00A 112 37.96 1thx 115 38.74 1tlfA 301 39.12 c.93.1.1 35687 2qb7A 397 40.43 1ro2A 216 43.98 d.264.1.2 97665 1y0bA 197 44.63 c.61.1.1 122476 1qysA 106 44.88 k.41.1.1 96603 1w4vA 119 46.28 2vfxA 206 46.78 2eq5A 228 47.90 1hv8A 367 49.28 c.37.1.19,c.37.1.19 32405,32406 2e27H 126 49.35 1z5zA 271 51.54 c.37.1.19 124499 2bmfA 451 52.30 c.37.1.14,c.37.1.14 128791,128792 1uekA 275 55.00 d.14.1.5,d.58.26.5 88483,88484 2p1zA 180 55.10 1wmjA 130 56.20 1dujA 187 57.17 d.135.1.1 41449 1oaa 259 58.64 1rf6A 427 58.95 d.68.2.2 97366 2fphX 165 59.20 2ddmA 283 61.98 1oaaA 259 64.39 c.2.1.2 29829 2p06A 114 64.40 a.204.1.3 139452 2dskA 311 64.91 1rifA 282 66.56 c.37.1.23 97507 2j23A 121 66.95 1kl7A 514 67.52 c.79.1.1 72678 1g6sA 427 67.72 d.68.2.2 39584 1z63A 500 67.90 c.37.1.19,c.37.1.19 124502,124503 1lt8A 406 68.34 c.1.26.1 78186 2cx7A 130 68.89 1c4oA 664 72.44 c.37.1.19,c.37.1.19 32415,32416 1eps 427 73.55 1lfpA 249 74.39 e.39.1.1 73885 1go4A 205 75.98 d.135.1.1 70292 2vvtA 290 76.33 1kngA 156 78.43 c.47.1.10 72777 2gzmA 267 78.83 1o51A 114 78.96 d.58.5.4 92480 1jh6A 189 79.76 d.61.1.1 66707 2jbhA 225 80.69 1a7j 290 82.29 1i3jA 116 82.98 d.285.1.1 61594 1dkuA 317 85.32 c.61.1.2,c.61.1.2 34118,34119 1jmkC 230 85.62 c.69.1.22 71747 1mp4A 292 86.86 c.68.1.6 79376 1vchA 175 86.95 c.61.1.1 119980 1n57A 291 87.28 c.23.16.2 85328 2i1uA 121 87.80