# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 2.13e-14 1pjrA 724 4.21e-14 c.37.1.19,c.37.1.19 32391,32392 1uaaA 673 8.01e-14 c.37.1.19,c.37.1.19 32401,32402 1pjr 724 1.34e-13 1w36B 1180 3.06e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 4.50e-11 1w36C 1122 1.65e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 1.20e-06 c.37.1.19,c.37.1.19 114128,114129 2gk6A 624 1.73e-06 2iwtA 125 2.722 2g7zA 282 3.480 2qv6A 268 3.576 2v1xA 591 4.107 2vluA 122 5.922 1m6nA 802 6.183 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1d2mA 665 7.520 c.37.1.19,c.37.1.19 32417,32418 2vm1A 118 7.628 1t5iA 172 8.247 c.37.1.19 106450 2oe3A 114 8.348 2c2aA 258 8.771 a.30.2.1,d.122.1.3 129662,129663 1tf5A 844 9.905 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1pzxA 289 11.79 c.119.1.1 95484 2bkwA 385 12.01 c.67.1.3 128714 2j0eA 266 12.24 2dt8A 280 12.28 2ifqA 105 12.63 c.47.1.1 137343 1mgpA 313 13.99 c.119.1.1 79098 2f51A 118 14.19 2e0qA 104 14.29 1vpvA 300 14.70 c.119.1.1 113975 1l0bA 229 15.36 c.15.1.3,c.15.1.3 73391,73392 1lu4A 136 17.59 c.47.1.10 91124 1jetA 517 17.67 c.94.1.1 35718 3cssA 267 18.42 1oroA 213 20.38 c.61.1.1 34093 3ch7A 266 21.39 1y0bA 197 23.63 c.61.1.1 122476 1jftA 340 24.69 a.35.1.5,c.93.1.1 66652,66653 1ksiB 642 25.44 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1tlfA 301 26.56 c.93.1.1 35687 2eq5A 228 26.64 2p62A 241 28.14 1ro0A 216 28.99 d.264.1.2 97664 2ps1A 226 29.27 2f21A 162 29.35 b.72.1.1,d.26.1.1 132793,132794 2dskA 311 29.89 1zzoA 136 35.18 c.47.1.10 125913 1vchA 175 36.78 c.61.1.1 119980 2vvtA 290 38.49 2qb7A 397 38.73 1hv8A 367 39.72 c.37.1.19,c.37.1.19 32405,32406 1lt8A 406 40.25 c.1.26.1 78186 1wmjA 130 40.63 2bmfA 451 42.30 c.37.1.14,c.37.1.14 128791,128792 1ro2A 216 43.64 d.264.1.2 97665 1uekA 275 43.75 d.14.1.5,d.58.26.5 88483,88484 2gzmA 267 43.84 1jh6A 189 45.58 d.61.1.1 66707 1oaa 259 46.08 1z5zA 271 48.67 c.37.1.19 124499 1dujA 187 50.33 d.135.1.1 41449 2ddmA 283 51.21 1thx 115 51.41 1c4oA 664 52.05 c.37.1.19,c.37.1.19 32415,32416 2p1zA 180 52.33 1b74A 254 53.48 c.78.2.1,c.78.2.1 35264,35265 2e27H 126 54.55 1gm5A 780 56.36 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1z63A 500 57.97 c.37.1.19,c.37.1.19 124502,124503 1t00A 112 58.81 2v8oA 444 61.66 1jmkC 230 63.15 c.69.1.22 71747 2fphX 165 63.19 1qpzA 340 63.33 a.35.1.5,c.93.1.1 17097,35673 1st9A 143 63.63 c.47.1.10 98987 2f9sA 151 64.08 c.47.1.10 133168 1uwcA 261 64.83 c.69.1.17 100101 1rifA 282 65.06 c.37.1.23 97507 2jfzA 255 65.13 1oaaA 259 67.24 c.2.1.2 29829 1mp4A 292 67.75 c.68.1.6 79376 1kngA 156 69.31 c.47.1.10 72777 1qhhA 167 70.02 c.37.1.19 32393 1qq9A 284 70.15 c.56.5.4 33841 1i3jA 116 71.17 d.285.1.1 61594 1w4vA 119 73.18 1y89A 238 73.54 2cb9A 244 73.77 2fshA 853 74.47 1n57A 291 76.66 c.23.16.2 85328 1rf6A 427 77.08 d.68.2.2 97366 2cx7A 130 79.13 1qvaA 223 80.38 c.37.1.19 32411 2db3A 434 80.66 1rscI 111 82.12 d.73.1.1 118620 1tuoA 464 84.16 1dkuA 317 86.07 c.61.1.2,c.61.1.2 34118,34119 1jfuA 186 86.17 c.47.1.10 62940 2p06A 114 86.29 a.204.1.3 139452 1lfpA 249 88.15 e.39.1.1 73885 1z7gA 217 89.13 c.61.1.1 124624