# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 2.70e-14 1pjrA 724 6.25e-14 c.37.1.19,c.37.1.19 32391,32392 1uaaA 673 1.21e-13 c.37.1.19,c.37.1.19 32401,32402 1pjr 724 1.69e-13 1w36B 1180 3.86e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 4.24e-11 1w36C 1122 1.79e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 9.23e-07 c.37.1.19,c.37.1.19 114128,114129 2gk6A 624 1.62e-06 2iwtA 125 3.552 2g7zA 282 3.604 2qv6A 268 4.190 2vluA 122 5.389 2j0eA 266 6.572 2oe3A 114 6.633 2v1xA 591 6.656 1m6nA 802 7.018 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2vm1A 118 7.359 1d2mA 665 7.656 c.37.1.19,c.37.1.19 32417,32418 2c2aA 258 7.874 a.30.2.1,d.122.1.3 129662,129663 2ifqA 105 8.311 c.47.1.1 137343 3cssA 267 12.04 1tf5A 844 12.21 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1t5iA 172 12.71 c.37.1.19 106450 2dt8A 280 12.75 2f51A 118 13.30 2e0qA 104 13.53 1pzxA 289 13.73 c.119.1.1 95484 2bkwA 385 13.78 c.67.1.3 128714 1mgpA 313 15.48 c.119.1.1 79098 1l0bA 229 16.25 c.15.1.3,c.15.1.3 73391,73392 1oroA 213 16.31 c.61.1.1 34093 2ps1A 226 17.14 3ch7A 266 17.32 1jetA 517 17.62 c.94.1.1 35718 1vpvA 300 17.72 c.119.1.1 113975 1lu4A 136 23.47 c.47.1.10 91124 2f21A 162 23.76 b.72.1.1,d.26.1.1 132793,132794 1y0bA 197 26.69 c.61.1.1 122476 1jftA 340 29.51 a.35.1.5,c.93.1.1 66652,66653 1tlfA 301 31.23 c.93.1.1 35687 1ro0A 216 32.45 d.264.1.2 97664 1dujA 187 34.60 d.135.1.1 41449 1z5zA 271 36.08 c.37.1.19 124499 1qq9A 284 36.24 c.56.5.4 33841 2dskA 311 36.50 2qb7A 397 38.85 1zzoA 136 38.96 c.47.1.10 125913 2eq5A 228 41.73 1uwcA 261 43.08 c.69.1.17 100101 1ksiB 642 44.58 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1w4vA 119 44.91 1uekA 275 45.91 d.14.1.5,d.58.26.5 88483,88484 1c4oA 664 46.79 c.37.1.19,c.37.1.19 32415,32416 2p1zA 180 47.28 2p62A 241 48.46 1oaa 259 48.46 1oaaA 259 48.66 c.2.1.2 29829 1t00A 112 49.61 1ro2A 216 50.32 d.264.1.2 97665 1dkuA 317 53.78 c.61.1.2,c.61.1.2 34118,34119 1kl7A 514 58.36 c.79.1.1 72678 1lt8A 406 60.45 c.1.26.1 78186 1jh6A 189 61.74 d.61.1.1 66707 2bmfA 451 61.87 c.37.1.14,c.37.1.14 128791,128792 2p06A 114 63.40 a.204.1.3 139452 1y89A 238 63.59 1z63A 500 64.18 c.37.1.19,c.37.1.19 124502,124503 1thx 115 64.75 1vchA 175 65.99 c.61.1.1 119980 2ddmA 283 66.85 1tuoA 464 67.46 1i3jA 116 69.23 d.285.1.1 61594 2vvtA 290 70.59 1rifA 282 70.70 c.37.1.23 97507 2gzmA 267 70.88 2j23A 121 71.19 1hv8A 367 71.33 c.37.1.19,c.37.1.19 32405,32406 1rf6A 427 71.35 d.68.2.2 97366 1gm5A 780 73.06 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1jmkC 230 73.29 c.69.1.22 71747 1ihuA 589 73.88 c.37.1.10,c.37.1.10 62394,62395 1go4A 205 74.60 d.135.1.1 70292 1w41A 101 75.08 1eps 427 77.86 1mp4A 292 79.22 c.68.1.6 79376 1kngA 156 79.58 c.47.1.10 72777 1u9iA 519 81.33 c.37.1.11,c.37.1.11 119637,119638 1o51A 114 81.66 d.58.5.4 92480 1qpzA 340 81.98 a.35.1.5,c.93.1.1 17097,35673 2vfxA 206 82.90 1kq6A 141 83.64 d.189.1.1 91020 1qysA 106 83.95 k.41.1.1 96603 1n62A 166 84.27 a.56.1.1,d.15.4.2 80090,80091 2fphX 165 84.60 1b74A 254 85.12 c.78.2.1,c.78.2.1 35264,35265 1qhhA 167 87.44 c.37.1.19 32393