# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 1.75e-13 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 1.95e-13 1uaaA 673 2.41e-13 c.37.1.19,c.37.1.19 32401,32402 1pjr 724 4.53e-13 1w36B 1180 4.93e-11 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 4.85e-09 1w36C 1122 6.90e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 4.91e-07 c.37.1.19,c.37.1.19 114128,114129 2gk6A 624 6.79e-06 1d2mA 665 0.08108 c.37.1.19,c.37.1.19 32417,32418 1c4oA 664 0.7985 c.37.1.19,c.37.1.19 32415,32416 1m6nA 802 2.616 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1hv8A 367 4.817 c.37.1.19,c.37.1.19 32405,32406 1tf5A 844 5.118 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2g7zA 282 5.334 2f51A 118 8.187 2e0qA 104 10.91 2iwtA 125 11.27 2vfxA 206 11.80 1ksiB 642 12.85 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 2oe3A 114 14.14 2dt8A 280 16.11 1i3jA 116 16.74 d.285.1.1 61594 2j23A 121 16.88 1vpvA 300 17.30 c.119.1.1 113975 2bi7A 384 18.41 1t5iA 172 18.59 c.37.1.19 106450 2ps1A 226 18.61 2bmfA 451 18.98 c.37.1.14,c.37.1.14 128791,128792 1oywA 523 21.08 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2v1xA 591 21.49 1lu4A 136 23.26 c.47.1.10 91124 1st9A 143 23.47 c.47.1.10 98987 2ootA 709 25.53 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2bkxA 242 27.80 1go4A 205 29.00 d.135.1.1 70292 3cssA 267 30.05 1lfpA 249 30.12 e.39.1.1 73885 2yzkA 178 30.58 1j7jA 178 31.27 c.61.1.1 84131 3ch7A 266 32.50 1vp7A 100 32.87 a.7.13.1 113941 2nptA 106 34.38 d.15.2.2 138448 2gar 212 35.30 1u9iA 519 36.27 c.37.1.11,c.37.1.11 119637,119638 2jfrA 234 37.15 2gukA 120 37.34 2gccA 70 39.13 d.10.1.2 37484 1ro0A 216 39.81 d.264.1.2 97664 2cm1A 260 40.35 1xa3A 437 41.27 c.123.1.1 115025 2j0eA 266 41.82 2nx9A 464 45.49 1el6A 219 46.55 d.182.1.1 42606 1klqA 197 49.94 d.135.1.1 68689 2b4lA 268 50.02 1wv9A 94 51.51 2j82A 240 52.19 2vluA 122 53.71 2djvA 79 56.91 1wmjA 130 57.26 1g71A 347 57.32 d.264.1.1 43268 1eqfA 280 57.64 a.29.2.1,a.29.2.1 16972,16973 1qf5A 431 59.04 c.37.1.10 32212 2eq5A 228 60.08 1ro2A 216 60.26 d.264.1.2 97665 2f21A 162 63.13 b.72.1.1,d.26.1.1 132793,132794 1pytA 94 63.18 d.58.3.1 39064 1ycoA 279 63.23 1fukA 165 65.80 c.37.1.19 32409 1elwA 118 69.39 a.118.8.1 19207 2infA 359 70.69 2p90A 319 70.99 1p1jA 533 71.62 c.2.1.3,d.81.1.3 87687,87688 2d6yA 202 71.65 a.4.1.9,a.121.1.1 131313,131314 1mejA 223 72.96 c.65.1.1 79029 1oroA 213 74.75 c.61.1.1 34093 1meoA 209 78.14 c.65.1.1 79035 1l0bA 229 79.66 c.15.1.3,c.15.1.3 73391,73392 1im5A 180 80.92 c.33.1.3 66211 2p62A 241 81.65 1b37B 472 82.82 c.3.1.2,d.16.1.5 30390,37954 1txjA 171 84.25 b.88.1.2 107424 2o1eA 312 87.01 1zzoA 136 88.21 c.47.1.10 125913 1b3jA 274 88.98 b.1.1.2,d.19.1.1 20855,38319