# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 4.07e-13 1pjrA 724 8.48e-13 c.37.1.19,c.37.1.19 32391,32392 1uaaA 673 2.17e-12 c.37.1.19,c.37.1.19 32401,32402 1pjr 724 2.94e-12 1w36B 1180 4.19e-11 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 2.95e-10 1w36C 1122 8.61e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 3.91e-06 c.37.1.19,c.37.1.19 114128,114129 2gk6A 624 5.41e-06 2v1xA 591 2.814 2g7zA 282 4.157 2oe3A 114 4.324 1lu4A 136 4.942 c.47.1.10 91124 2qv6A 268 5.854 2iwtA 125 6.229 1tf5A 844 6.893 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2e0qA 104 7.140 1m6nA 802 8.051 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1ro0A 216 8.906 d.264.1.2 97664 1l0bA 229 9.194 c.15.1.3,c.15.1.3 73391,73392 2vm1A 118 9.235 2ifqA 105 11.60 c.47.1.1 137343 1ro2A 216 12.08 d.264.1.2 97665 2vluA 122 12.79 2p62A 241 12.83 2f51A 118 13.05 2c2aA 258 14.17 a.30.2.1,d.122.1.3 129662,129663 1d2mA 665 14.48 c.37.1.19,c.37.1.19 32417,32418 1wmjA 130 15.33 1jetA 517 15.36 c.94.1.1 35718 2ps1A 226 15.54 1hv8A 367 18.09 c.37.1.19,c.37.1.19 32405,32406 1gt7A 274 18.43 c.74.1.1 70398 1t00A 112 18.90 1zzoA 136 21.97 c.47.1.10 125913 1vpvA 300 25.64 c.119.1.1 113975 1dujA 187 26.07 d.135.1.1 41449 1st9A 143 26.83 c.47.1.10 98987 1c4oA 664 27.72 c.37.1.19,c.37.1.19 32415,32416 2bkwA 385 28.46 c.67.1.3 128714 2f9sA 151 29.02 c.47.1.10 133168 2vfxA 206 29.06 1ksiB 642 30.35 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1go4A 205 31.65 d.135.1.1 70292 1ojrA 274 37.07 c.74.1.1 93147 1vchA 175 37.14 c.61.1.1 119980 2cvkA 110 39.37 1klqA 197 40.44 d.135.1.1 68689 2f21A 162 41.10 b.72.1.1,d.26.1.1 132793,132794 2j23A 121 41.31 2dt8A 280 42.02 2i4aA 107 42.13 2fshA 853 42.21 1kngA 156 45.40 c.47.1.10 72777 2vdaA 828 45.58 2dskA 311 48.99 1thx 115 50.64 1nswA 105 51.79 c.47.1.1 92097 2p06A 114 53.20 a.204.1.3 139452 2pu9C 111 56.09 2yzuA 109 56.10 2eq5A 228 56.65 1pvtA 238 57.09 c.74.1.1 95189 1w4vA 119 57.23 1mp4A 292 57.46 c.68.1.6 79376 3bofA 566 59.56 2i1uA 121 59.97 1t5iA 172 60.21 c.37.1.19 106450 1gm5A 780 60.62 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1svyA 114 61.05 d.109.1.1 40831 1oywA 523 63.46 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1e4cP 215 65.22 c.74.1.1 34969 2fphX 165 65.61 1kq6A 141 65.80 d.189.1.1 91020 1qk8A 146 68.59 c.47.1.10 33061 2qb7A 397 68.95 1im5A 180 69.83 c.33.1.3 66211 1tlfA 301 72.43 c.93.1.1 35687 3cssA 267 72.92 2cx7A 130 74.83 2yw2A 424 78.28 1pnoA 180 79.56 c.31.1.4 94953 1lt8A 406 79.90 c.1.26.1 78186 1a98A 152 80.14 c.61.1.1 34021 1i3jA 116 81.61 d.285.1.1 61594 1n62A 166 83.45 a.56.1.1,d.15.4.2 80090,80091 1m4lA 307 84.72 c.56.5.1 78604 2bmfA 451 85.82 c.37.1.14,c.37.1.14 128791,128792 1eps 427 86.35 1txjA 171 86.92 b.88.1.2 107424 3ch7A 266 87.80 1i5gA 144 88.29 c.47.1.10 61784 1tuoA 464 88.56 1rf6A 427 88.93 d.68.2.2 97366 2yzhA 171 89.15 1e4fT 419 89.96 c.55.1.1,c.55.1.1 33453,33454 2v8oA 444 89.99