# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 1.06e-10 1uaaA 673 5.66e-10 c.37.1.19,c.37.1.19 32401,32402 1pjrA 724 6.93e-09 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 9.58e-09 1qhhD 169 2.45e-08 1w36B 1180 3.40e-08 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36C 1122 1.76e-07 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 3.75e-05 c.37.1.19,c.37.1.19 114128,114129 2gk6A 624 7.75e-05 1lu4A 136 1.845 c.47.1.10 91124 2j04B 524 3.726 2v1xA 591 3.814 2yzhA 171 5.558 2f9sA 151 6.050 c.47.1.10 133168 2rijA 387 6.700 1nbaA 264 7.074 c.33.1.3 31753 1fc6A 388 7.503 b.36.1.3,c.14.1.2 64738,64739 1st9A 143 7.523 c.47.1.10 98987 2vgaA 207 8.451 2r8cA 426 9.098 1mwsA 646 9.802 d.17.4.5,d.175.1.1,e.3.1.1 79592,79593,79594 2rfmA 192 10.23 2d4yA 463 10.50 2cx4A 164 10.80 c.47.1.10 130973 1nf2A 268 14.34 c.108.1.10 91849 1r89A 437 16.19 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1e4cP 215 18.28 c.74.1.1 34969 1ro2A 216 20.38 d.264.1.2 97665 2qghA 425 22.46 1vqqA 646 22.84 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2fphX 165 23.93 2uvfA 608 24.68 2vm1A 118 26.69 2oe3A 114 27.10 3c68A 761 27.59 1lfaA 187 28.29 c.62.1.1 34122 3c7bA 417 28.79 2q4aA 330 29.08 b.82.2.8 139839 3cswA 285 29.31 2c42A 1231 30.13 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 1fgxA 288 33.63 c.68.1.2 34508 1ebdA 455 34.41 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 2vluA 122 36.12 1k0fA 277 37.65 c.92.2.2 71974 1e5mA 416 38.36 c.95.1.1,c.95.1.1 58973,58974 2z0lA 318 38.96 1dkuA 317 39.24 c.61.1.2,c.61.1.2 34118,34119 2e0qA 104 40.59 2c0dA 221 41.33 2p8bA 369 41.56 2bkwA 385 41.59 c.67.1.3 128714 2f21A 162 42.09 b.72.1.1,d.26.1.1 132793,132794 1ie9A 259 43.34 a.123.1.1 62318 2ac1A 541 44.25 1l1jA 239 44.50 b.47.1.1 84516 2a6hD 1524 46.08 e.29.1.2 126265 2jhnA 295 48.46 2p62A 241 48.71 1y8qA 346 50.06 1peqA 714 50.32 a.98.1.1,c.7.1.2 104131,104132 1nswA 105 50.60 c.47.1.1 92097 2ywnA 157 50.71 1l0bA 229 50.74 c.15.1.3,c.15.1.3 73391,73392 1wyuB 474 51.15 c.67.1.7 121453 2f51A 118 51.19 2ahfA 377 51.80 2iwtA 125 52.00 1x7dA 350 52.93 c.2.1.13 114927 2v0hA 456 53.01 1klqA 197 53.79 d.135.1.1 68689 2ddmA 283 55.65 2opiA 212 56.30 2jabA 136 58.46 3bofA 566 58.91 2af4C 333 59.03 c.77.1.5 126656 2zctA 249 59.23 1nj4A 363 59.77 b.105.1.1,e.3.1.1 80545,80546 1ot1A 686 59.78 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1td2A 287 60.33 c.72.1.5 106765 1d0hA 469 62.02 b.29.1.6,b.42.4.2 24265,25610 2j1pA 293 63.63 1e6bA 221 66.37 a.45.1.1,c.47.1.5 59294,59295 1txjA 171 66.49 b.88.1.2 107424 2e0cA 409 66.84 2ifqA 105 66.94 c.47.1.1 137343 2gsaA 432 69.27 c.67.1.4 34446 1gm5A 780 71.11 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1kngA 156 72.25 c.47.1.10 72777 3b9qA 302 73.58 2r7dA 469 75.38 2btzA 394 75.86 2e27H 126 77.40 1xyfA 436 78.23 b.42.2.1,c.1.8.3 25577,28909 1noyA 388 79.13 c.55.3.5 33713 1v04A 355 79.23 b.68.6.2 100240 1djqA 729 80.18 c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 3d9aH 210 80.50 2yw2A 424 81.55 1im5A 180 82.19 c.33.1.3 66211 1pxzA 346 82.28 b.80.1.1 111643 2gdzA 267 86.12 c.2.1.2 135043 1i2cA 404 86.47 c.2.1.2 83666 1t5iA 172 86.75 c.37.1.19 106450 2a6hA 315 86.77 d.74.3.1,d.181.1.1 126260,126261 3cssA 267 86.86 1kq6A 141 89.75 d.189.1.1 91020