# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 1.97e-13 1pjrA 724 3.05e-13 c.37.1.19,c.37.1.19 32391,32392 1uaaA 673 5.96e-13 c.37.1.19,c.37.1.19 32401,32402 1pjr 724 1.35e-12 1w36B 1180 1.43e-11 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 1.39e-10 1w36C 1122 4.42e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 2.04e-06 1w36D 608 2.08e-06 c.37.1.19,c.37.1.19 114128,114129 2v1xA 591 3.778 2g7zA 282 5.845 2ps1A 226 6.428 1d2mA 665 7.313 c.37.1.19,c.37.1.19 32417,32418 2oe3A 114 7.826 2e0qA 104 9.95 1tf5A 844 10.15 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2qv6A 268 11.12 1m6nA 802 11.22 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1lu4A 136 11.41 c.47.1.10 91124 2c2aA 258 11.46 a.30.2.1,d.122.1.3 129662,129663 1ro0A 216 12.76 d.264.1.2 97664 2bkwA 385 12.93 c.67.1.3 128714 1ro2A 216 16.00 d.264.1.2 97665 2vm1A 118 16.27 1c4oA 664 16.37 c.37.1.19,c.37.1.19 32415,32416 1hv8A 367 17.22 c.37.1.19,c.37.1.19 32405,32406 2f21A 162 17.33 b.72.1.1,d.26.1.1 132793,132794 2f51A 118 17.93 2iwtA 125 18.45 1gt7A 274 18.63 c.74.1.1 70398 2ifqA 105 19.87 c.47.1.1 137343 2vluA 122 21.87 2p62A 241 25.22 1jetA 517 28.05 c.94.1.1 35718 1t00A 112 29.28 2p06A 114 29.34 a.204.1.3 139452 2dskA 311 29.54 1l0bA 229 34.72 c.15.1.3,c.15.1.3 73391,73392 3bofA 566 35.41 1ojrA 274 37.07 c.74.1.1 93147 1vchA 175 39.76 c.61.1.1 119980 1ksiB 642 40.08 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1zzoA 136 41.14 c.47.1.10 125913 1dujA 187 44.34 d.135.1.1 41449 1vpvA 300 46.09 c.119.1.1 113975 1im5A 180 46.52 c.33.1.3 66211 1pinA 163 47.28 b.72.1.1,d.26.1.1 27802,38431 2qb7A 397 47.84 2vfxA 206 47.96 3cssA 267 49.38 2bmfA 451 50.64 c.37.1.14,c.37.1.14 128791,128792 2j23A 121 52.53 1go4A 205 53.23 d.135.1.1 70292 1i3jA 116 53.68 d.285.1.1 61594 1pvtA 238 53.88 c.74.1.1 95189 2cvkA 110 53.93 1oywA 523 54.72 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2eq5A 228 55.47 3ch7A 266 55.52 1pnoA 180 56.41 c.31.1.4 94953 2i4aA 107 56.65 1st9A 143 58.81 c.47.1.10 98987 1w4vA 119 59.23 1n62A 166 59.54 a.56.1.1,d.15.4.2 80090,80091 1wmjA 130 60.70 1t5iA 172 61.10 c.37.1.19 106450 1m5wA 243 62.20 c.1.24.1 84836 2dt8A 280 62.88 2j0eA 266 63.03 1kq6A 141 64.36 d.189.1.1 91020 1klqA 197 67.29 d.135.1.1 68689 1gd5A 130 68.15 d.189.1.1 60439 1e4cP 215 69.25 c.74.1.1 34969 1nswA 105 69.39 c.47.1.1 92097 2fshA 853 69.91 2i1uA 121 70.76 2qghA 425 70.79 2gzmA 267 71.21 1gm5A 780 71.78 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1kngA 156 74.06 c.47.1.10 72777 2yzuA 109 75.11 1lt8A 406 75.59 c.1.26.1 78186 1a98A 152 75.79 c.61.1.1 34021 1tuoA 464 76.24 1uekA 275 76.36 d.14.1.5,d.58.26.5 88483,88484 2f9sA 151 77.41 c.47.1.10 133168 2cx7A 130 77.74 1uwcA 261 77.95 c.69.1.17 100101 1thx 115 78.75 1dkuA 317 81.39 c.61.1.2,c.61.1.2 34118,34119 2pu9C 111 83.75 1tlfA 301 84.57 c.93.1.1 35687 1rscI 111 86.77 d.73.1.1 118620 2vdaA 828 86.99