# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 8.52e-15 1uaaA 673 9.84e-15 c.37.1.19,c.37.1.19 32401,32402 1pjrA 724 2.14e-14 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 4.21e-14 1w36B 1180 1.29e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 2.93e-12 1w36C 1122 9.06e-09 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 2.73e-07 1w36D 608 3.15e-07 c.37.1.19,c.37.1.19 114128,114129 2iwtA 125 2.582 2c2aA 258 3.549 a.30.2.1,d.122.1.3 129662,129663 2oe3A 114 4.456 1l0bA 229 4.491 c.15.1.3,c.15.1.3 73391,73392 1wmjA 130 5.013 1lu4A 136 5.210 c.47.1.10 91124 2vm1A 118 6.975 2vluA 122 7.402 2ifqA 105 8.760 c.47.1.1 137343 2e0qA 104 9.401 2qb7A 397 14.13 2v1xA 591 14.17 2f51A 118 14.66 1d2mA 665 14.95 c.37.1.19,c.37.1.19 32417,32418 2qv6A 268 15.38 2g7zA 282 15.73 1jetA 517 17.01 c.94.1.1 35718 1zzoA 136 18.81 c.47.1.10 125913 2bkwA 385 19.03 c.67.1.3 128714 1t00A 112 23.22 1ksiB 642 23.32 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 2f21A 162 23.32 b.72.1.1,d.26.1.1 132793,132794 1rf6A 427 24.39 d.68.2.2 97366 2eq5A 228 25.80 1kngA 156 27.40 c.47.1.10 72777 1st9A 143 27.74 c.47.1.10 98987 1tf5A 844 27.78 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1gm5A 780 29.22 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1m6nA 802 31.18 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1kq6A 141 32.23 d.189.1.1 91020 1thx 115 32.55 1jfuA 186 32.74 c.47.1.10 62940 1hv8A 367 33.72 c.37.1.19,c.37.1.19 32405,32406 2dt8A 280 33.93 2vfxA 206 36.50 1dujA 187 36.58 d.135.1.1 41449 2uuuA 584 37.02 2bmfA 451 38.66 c.37.1.14,c.37.1.14 128791,128792 1t5iA 172 40.54 c.37.1.19 106450 2f7kA 327 41.30 1vchA 175 41.55 c.61.1.1 119980 1uwcA 261 41.75 c.69.1.17 100101 1qk8A 146 42.32 c.47.1.10 33061 2j23A 121 44.78 2f9sA 151 46.23 c.47.1.10 133168 2ddmA 283 49.53 2gzmA 267 49.66 2e27H 126 53.02 2b1kA 168 54.47 1c4oA 664 55.93 c.37.1.19,c.37.1.19 32415,32416 1ro0A 216 56.55 d.264.1.2 97664 1lt8A 406 57.06 c.1.26.1 78186 1i5gA 144 57.17 c.47.1.10 61784 1g6sA 427 57.30 d.68.2.2 39584 2i4aA 107 57.90 1gd5A 130 60.34 d.189.1.1 60439 2db3A 434 62.14 2vvtA 290 63.53 1i3jA 116 63.55 d.285.1.1 61594 2p62A 241 66.08 1el6A 219 68.00 d.182.1.1 42606 1y0bA 197 68.65 c.61.1.1 122476 1ro2A 216 69.11 d.264.1.2 97665 1r26A 125 74.78 c.47.1.1 96847 3bwgA 239 75.02 1go4A 205 77.07 d.135.1.1 70292 2i1uA 121 78.13 1nswA 105 79.31 c.47.1.1 92097 1dkuA 317 80.71 c.61.1.2,c.61.1.2 34118,34119 1x7dA 350 80.74 c.2.1.13 114927 1vpvA 300 81.33 c.119.1.1 113975 1mp4A 292 81.91 c.68.1.6 79376 1vdeA 454 83.08 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1ewxA 146 83.24 c.47.1.10 33062 2nt0A 497 83.65 b.71.1.2,c.1.8.3 138561,138562 2btzA 394 87.56 1klqA 197 88.92 d.135.1.1 68689 2ctc 307 89.95