# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 9.62e-15 1uaaA 673 2.16e-14 c.37.1.19,c.37.1.19 32401,32402 1pjrA 724 2.37e-14 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 5.39e-14 1w36B 1180 1.02e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 2.42e-12 1w36C 1122 1.23e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 2.75e-07 1w36D 608 9.41e-07 c.37.1.19,c.37.1.19 114128,114129 2iwtA 125 1.657 2oe3A 114 3.408 2vm1A 118 3.972 2c2aA 258 4.157 a.30.2.1,d.122.1.3 129662,129663 2v1xA 591 4.385 1lu4A 136 4.910 c.47.1.10 91124 2vluA 122 5.792 1tf5A 844 6.700 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1hv8A 367 8.774 c.37.1.19,c.37.1.19 32405,32406 1m6nA 802 9.548 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2qv6A 268 9.876 2ps1A 226 10.26 2g7zA 282 10.48 2ifqA 105 11.75 c.47.1.1 137343 2e0qA 104 13.78 1vchA 175 15.08 c.61.1.1 119980 1l0bA 229 15.22 c.15.1.3,c.15.1.3 73391,73392 2dt8A 280 15.97 1d2mA 665 15.97 c.37.1.19,c.37.1.19 32417,32418 2f51A 118 16.62 1vpvA 300 16.98 c.119.1.1 113975 2vfxA 206 17.36 1lt8A 406 18.22 c.1.26.1 78186 1wmjA 130 18.76 2f9sA 151 19.55 c.47.1.10 133168 3cssA 267 19.97 3ch7A 266 21.39 1zzoA 136 21.93 c.47.1.10 125913 1st9A 143 22.07 c.47.1.10 98987 1jfuA 186 23.13 c.47.1.10 62940 2p62A 241 23.35 1jetA 517 26.31 c.94.1.1 35718 1thx 115 26.45 1ksiB 642 26.68 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 2bkwA 385 27.02 c.67.1.3 128714 2eq5A 228 31.84 2j23A 121 33.72 1ro0A 216 34.92 d.264.1.2 97664 1tlfA 301 35.09 c.93.1.1 35687 1mgpA 313 35.33 c.119.1.1 79098 2j0eA 266 36.90 1y0bA 197 37.46 c.61.1.1 122476 1jh6A 189 38.22 d.61.1.1 66707 1dkuA 317 39.04 c.61.1.2,c.61.1.2 34118,34119 1go4A 205 39.13 d.135.1.1 70292 2f21A 162 40.30 b.72.1.1,d.26.1.1 132793,132794 1kngA 156 42.02 c.47.1.10 72777 1klqA 197 42.62 d.135.1.1 68689 1pzxA 289 45.35 c.119.1.1 95484 2gzmA 267 46.70 1t5iA 172 49.99 c.37.1.19 106450 1t00A 112 50.00 1dujA 187 50.47 d.135.1.1 41449 1uwcA 261 50.62 c.69.1.17 100101 1txjA 171 51.06 b.88.1.2 107424 2qb7A 397 52.85 1qk8A 146 53.00 c.47.1.10 33061 3bofA 566 53.21 1el6A 219 53.23 d.182.1.1 42606 1uekA 275 54.25 d.14.1.5,d.58.26.5 88483,88484 2fshA 853 55.38 2qvpA 275 56.40 1oaaA 259 57.31 c.2.1.2 29829 2fphX 165 57.38 2cb9A 244 58.31 1i5gA 144 60.16 c.47.1.10 61784 1g6sA 427 61.01 d.68.2.2 39584 2bmfA 451 61.97 c.37.1.14,c.37.1.14 128791,128792 1oroA 213 61.99 c.61.1.1 34093 2ctc 307 62.85 1kwmA 402 64.76 c.56.5.1,d.58.3.1 73079,73080 2vpzA 765 65.32 2cx7A 130 65.83 1gm5A 780 67.18 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 2db3A 434 67.64 1gt7A 274 68.65 c.74.1.1 70398 1ro2A 216 69.01 d.264.1.2 97665 1f5sA 211 69.71 c.108.1.4 59656 2v8oA 444 74.15 1nswA 105 76.34 c.47.1.1 92097 1c4oA 664 77.07 c.37.1.19,c.37.1.19 32415,32416 2jbhA 225 77.14 1eps 427 78.29 2g30A 258 78.36 b.1.10.1,d.105.1.1 134546,134547 1m4lA 307 79.50 c.56.5.1 78604 2b5eA 504 79.59 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1a78A 134 81.25 b.29.1.3 24212 1bowA 159 81.85 d.60.1.1 39528 1rf6A 427 82.26 d.68.2.2 97366 1a98A 152 84.62 c.61.1.1 34021 2p06A 114 84.66 a.204.1.3 139452 2heuA 401 84.80 2uuuA 584 85.74 1oaa 259 86.62 1d5rA 324 86.97 b.7.1.1,c.45.1.1 23181,32697 1a7j 290 87.50 2dclA 127 88.23