# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uaaA 673 3.13e-14 c.37.1.19,c.37.1.19 32401,32402 2is6A 680 3.19e-14 1pjrA 724 5.86e-14 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 1.54e-13 1w36B 1180 1.99e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1qhhD 169 8.45e-12 1w36C 1122 1.46e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 4.92e-07 1w36D 608 9.40e-07 c.37.1.19,c.37.1.19 114128,114129 2v1xA 591 3.929 2iwtA 125 4.232 1lu4A 136 4.701 c.47.1.10 91124 2vm1A 118 5.293 2g7zA 282 6.884 2oe3A 114 6.934 1tf5A 844 7.582 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2qv6A 268 8.488 1wmjA 130 9.252 2dt8A 280 9.330 2bkwA 385 9.659 c.67.1.3 128714 2ifqA 105 10.55 c.47.1.1 137343 2vluA 122 11.00 1vpvA 300 11.51 c.119.1.1 113975 2f51A 118 12.84 2p62A 241 13.33 1hv8A 367 14.04 c.37.1.19,c.37.1.19 32405,32406 2j0eA 266 16.62 2ps1A 226 16.94 2vfxA 206 17.11 1pzxA 289 17.23 c.119.1.1 95484 2e0qA 104 17.92 1lt8A 406 17.95 c.1.26.1 78186 2jbhA 225 18.77 1jetA 517 19.25 c.94.1.1 35718 1ksiB 642 19.37 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 1d2mA 665 19.88 c.37.1.19,c.37.1.19 32417,32418 1zzoA 136 20.03 c.47.1.10 125913 2c2aA 258 20.81 a.30.2.1,d.122.1.3 129662,129663 2j23A 121 21.91 3cssA 267 22.28 1mgpA 313 22.61 c.119.1.1 79098 2eq5A 228 25.90 2bmfA 451 26.07 c.37.1.14,c.37.1.14 128791,128792 1m6nA 802 26.31 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1thx 115 29.24 1vchA 175 29.27 c.61.1.1 119980 1l0bA 229 29.91 c.15.1.3,c.15.1.3 73391,73392 1nswA 105 32.85 c.47.1.1 92097 1dujA 187 33.37 d.135.1.1 41449 1gm5A 780 34.54 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1oroA 213 35.43 c.61.1.1 34093 1y0bA 197 35.84 c.61.1.1 122476 2db3A 434 36.01 1oaaA 259 40.33 c.2.1.2 29829 1st9A 143 40.45 c.47.1.10 98987 1kngA 156 40.97 c.47.1.10 72777 2f21A 162 41.04 b.72.1.1,d.26.1.1 132793,132794 1qhhA 167 41.37 c.37.1.19 32393 1rf6A 427 41.38 d.68.2.2 97366 1kq6A 141 43.21 d.189.1.1 91020 2v8oA 444 43.76 1klqA 197 45.61 d.135.1.1 68689 2i4aA 107 46.21 1go4A 205 46.71 d.135.1.1 70292 1uwcA 261 47.01 c.69.1.17 100101 1t5iA 172 47.78 c.37.1.19 106450 2fphX 165 48.72 1t00A 112 49.10 3ch7A 266 50.68 1i5gA 144 50.88 c.47.1.10 61784 2z83A 459 51.83 1jfuA 186 52.97 c.47.1.10 62940 2e27H 126 55.18 2vdaA 828 55.63 1txjA 171 55.77 b.88.1.2 107424 2qb7A 397 57.54 2dskA 311 57.96 2ctc 307 60.20 2fokA 579 61.55 a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1g6sA 427 63.49 d.68.2.2 39584 1uekA 275 66.45 d.14.1.5,d.58.26.5 88483,88484 2f9sA 151 66.93 c.47.1.10 133168 1tlfA 301 66.97 c.93.1.1 35687 1m4lA 307 68.25 c.56.5.1 78604 1lfpA 249 69.22 e.39.1.1 73885 1qk8A 146 69.67 c.47.1.10 33061 2qvpA 275 69.79 1dkuA 317 70.41 c.61.1.2,c.61.1.2 34118,34119 1mp4A 292 71.88 c.68.1.6 79376 1ro2A 216 75.83 d.264.1.2 97665 1ro0A 216 78.82 d.264.1.2 97664 1c4oA 664 81.10 c.37.1.19,c.37.1.19 32415,32416 2gzmA 267 81.28 2bi7A 384 83.50 1tuoA 464 83.93 2fshA 853 83.98 1el6A 219 84.45 d.182.1.1 42606 1ewxA 146 85.49 c.47.1.10 33062 1w4vA 119 86.20 1oaa 259 89.39