# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2is6A	680	2.20e-14		
1uaaA	673	2.44e-14	c.37.1.19,c.37.1.19	32401,32402
1pjrA	724	2.98e-14	c.37.1.19,c.37.1.19	32391,32392
1pjr	724	9.07e-14		
1w36B	1180	9.71e-11	c.37.1.19,c.37.1.19,c.52.1.24	114122,114123,114124
1w36C	1122	7.25e-08	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
1w36D	608	9.85e-08	c.37.1.19,c.37.1.19	114128,114129
1qhhD	169	9.92e-06		
2gk6A	624	5.59e-05		
2g7zA	282	2.607		
2bmfA	451	3.470	c.37.1.14,c.37.1.14	128791,128792
1d2mA	665	5.345	c.37.1.19,c.37.1.19	32417,32418
2vfxA	206	5.760		
2vl7A	540	6.218		
1pzxA	289	10.42	c.119.1.1	95484
1go4A	205	10.71	d.135.1.1	70292
1dujA	187	12.53	d.135.1.1	41449
1hv8A	367	15.94	c.37.1.19,c.37.1.19	32405,32406
1eyrA	228	17.32	c.68.1.13	34514
1q3iA	214	18.82	d.220.1.1	104524
2f21A	162	22.75	b.72.1.1,d.26.1.1	132793,132794
2e0qA	104	25.93		
1kllA	130	27.10	d.32.1.2	72720
2dt8A	280	27.51		
1zklA	353	30.46		
2iwtA	125	30.57		
2ifqA	105	32.04	c.47.1.1	137343
1rqbA	539	32.30	a.5.7.2,c.1.10.5	105057,105058
1xkiA	162	33.47	b.60.1.1	115408
1klqA	197	33.92	d.135.1.1	68689
2hmaA	376	34.07		
1twuA	139	35.06	d.32.1.8	107413
1f9zA	135	36.22	d.32.1.1	38484
2infA	359	38.09		
1c4oA	664	40.08	c.37.1.19,c.37.1.19	32415,32416
1mp4A	292	43.06	c.68.1.6	79376
1h54A	754	44.89	a.102.1.4,b.30.5.3	60634,60635
1gm5A	780	46.89	a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19	65298,65299,65300,65301
1ut7A	171	48.64	b.143.1.1	99906
2f51A	118	52.61		
1hkxA	147	53.79	d.17.4.7	83567
1s48A	609	54.33	e.8.1.4	98475
1l3aA	228	60.54	d.18.1.2	73531
1t7pA	698	60.84	c.55.3.5,e.8.1.1	33712,43005
2oseA	234	63.05		
2oe3A	114	63.64		
2ousA	331	63.69		
2nx9A	464	64.69		
2oyoA	196	66.05		
1qgoA	264	70.86	c.92.1.2	35596
2p45B	123	71.35		
1zuxA	224	71.99		
1vpvA	300	73.28	c.119.1.1	113975
2f86B	143	73.59		
2vm1A	118	74.05		
2ovyA	362	74.99		
2vluA	122	79.92		
1fa8A	135	80.97	d.32.1.1	38486
1yksA	440	81.31	c.37.1.14,c.37.1.14	123561,123562
1t5iA	172	82.24	c.37.1.19	106450
2jbhA	225	87.01		
1ebdA	455	87.52	c.3.1.5,c.3.1.5,d.87.1.1	30577,30578,40210
1m7gA	211	88.05	c.37.1.4	78724
2p06A	114	89.46	a.204.1.3	139452
1rkpA	326	89.57	a.211.1.2	97620
2gukA	120	89.71