# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1uaaA 673 2.67e-14 c.37.1.19,c.37.1.19 32401,32402 2is6A 680 4.68e-14 1pjr 724 2.31e-13 1pjrA 724 2.59e-13 c.37.1.19,c.37.1.19 32391,32392 1w36B 1180 5.01e-11 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36C 1122 3.35e-08 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1qhhD 169 9.82e-08 1w36D 608 3.79e-07 c.37.1.19,c.37.1.19 114128,114129 2gk6A 624 7.07e-06 1d2mA 665 0.4702 c.37.1.19,c.37.1.19 32417,32418 2vl7A 540 3.589 1c4oA 664 5.469 c.37.1.19,c.37.1.19 32415,32416 1oywA 523 7.149 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2iwtA 125 7.936 2v8oA 444 8.131 2vluA 122 8.590 2oe3A 114 8.703 2bmfA 451 8.830 c.37.1.14,c.37.1.14 128791,128792 2vm1A 118 10.07 2e0qA 104 11.86 2g7zA 282 12.80 2f51A 118 15.35 1wmjA 130 15.37 2v1xA 591 16.75 1a1vA 476 16.92 c.37.1.14,c.37.1.14 32467,32468 1lu4A 136 17.83 c.47.1.10 91124 2cblA 305 20.71 a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 3cssA 267 21.93 1n57A 291 22.86 c.23.16.2 85328 2f21A 162 23.26 b.72.1.1,d.26.1.1 132793,132794 2dt8A 280 26.18 3crvA 551 29.33 3citA 160 30.42 1el6A 219 30.64 d.182.1.1 42606 3ch7A 266 33.59 2ootA 709 34.72 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 1b47A 304 35.21 a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 2z83A 459 38.03 1mp4A 292 38.11 c.68.1.6 79376 2ifqA 105 39.94 c.47.1.1 137343 1ksiB 642 41.57 b.30.2.1,d.17.2.1,d.17.2.1 24409,38045,38046 2vfxA 206 41.60 1x7dA 350 42.09 c.2.1.13 114927 2cx7A 130 42.47 2oseA 234 43.66 2infA 359 44.18 2vgaA 207 45.52 1qk8A 146 45.81 c.47.1.10 33061 2j23A 121 48.23 1hv8A 367 49.26 c.37.1.19,c.37.1.19 32405,32406 1kllA 130 52.87 d.32.1.2 72720 2gukA 120 53.43 3buxB 329 54.47 1yksA 440 54.94 c.37.1.14,c.37.1.14 123561,123562 2ohxA 374 54.98 b.35.1.2,c.2.1.1 24669,29685 1t5iA 172 55.42 c.37.1.19 106450 1rf6A 427 56.54 d.68.2.2 97366 2j0eA 266 59.62 1hkbA 917 61.08 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1g6sA 427 61.44 d.68.2.2 39584 2prrA 197 63.46 1klqA 197 63.69 d.135.1.1 68689 1p1jA 533 63.83 c.2.1.3,d.81.1.3 87687,87688 1qf5A 431 64.66 c.37.1.10 32212 3bt7A 369 65.09 3tdtA 274 66.69 b.81.1.2 28053 1t00A 112 67.04 1gm5A 780 67.85 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1i5gA 144 68.40 c.47.1.10 61784 1kngA 156 68.75 c.47.1.10 72777 1go4A 205 70.27 d.135.1.1 70292 1r26A 125 70.79 c.47.1.1 96847 1trb 320 71.86 1g7sA 594 74.26 b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2f7kA 327 78.30 1eps 427 79.93 1r89A 437 80.64 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1mo7A 213 80.95 d.220.1.1 85028 1j34B 123 81.65 d.169.1.1 84049 1ee2A 373 82.74 b.35.1.2,c.2.1.1 24663,29679 1r5iD 216 89.63 a.202.1.1 97091