# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 2.76e-07 1uaaA 673 3.31e-07 c.37.1.19,c.37.1.19 32401,32402 1pjrA 724 6.15e-07 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 8.19e-07 1w36C 1122 0.000831 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 0.001547 1w36B 1180 0.002214 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36D 608 0.003282 c.37.1.19,c.37.1.19 114128,114129 1qhhD 169 0.02239 1d2mA 665 1.350 c.37.1.19,c.37.1.19 32417,32418 2yx1A 336 1.742 2bmfA 451 2.305 c.37.1.14,c.37.1.14 128791,128792 2iu4A 336 2.769 2v1xA 591 2.934 1fukA 165 3.007 c.37.1.19 32409 1c4oA 664 5.555 c.37.1.19,c.37.1.19 32415,32416 2va8A 715 6.367 3bxoA 239 7.015 2ih2A 421 7.974 1rifA 282 8.135 c.37.1.23 97507 1a1vA 476 8.366 c.37.1.14,c.37.1.14 32467,32468 2gh1A 301 9.829 c.66.1.49 135170 2fz4A 237 10.51 c.37.1.19 134419 2db3A 434 10.61 2i4iA 417 12.30 1o6dA 163 12.32 c.116.1.3 92567 1un8A 552 14.46 c.119.1.2,a.208.1.1 103806,99661 1m6nA 802 15.54 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1hv8A 367 17.08 c.37.1.19,c.37.1.19 32405,32406 2ibtA 421 17.93 c.66.1.27,d.287.1.1 137205,137206 2g9wA 138 18.14 2jgnA 185 18.50 2oo6A 409 18.67 1jdpA 441 20.36 c.93.1.1 62906 1oywA 523 21.44 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1heiA 451 21.76 c.37.1.14,c.37.1.14 32463,32464 2v8oA 444 22.77 1xmaA 145 24.33 a.4.5.61 115477 2bodX 286 25.28 c.6.1.1 128909 2dt8A 280 25.61 1xvlA 321 25.85 c.92.2.2 122380 1ycoA 279 26.00 2e1vA 454 26.01 1tf5A 844 28.24 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2obfA 289 31.95 2admA 421 34.90 c.66.1.27,d.287.1.1 111611,111612 1oi2A 366 35.64 c.119.1.2 103802 1hp4A 512 36.14 c.1.8.6,d.92.2.1 61111,61112 1sd4A 126 37.00 a.4.5.39 105428 2p8bA 369 37.12 1w97L 246 37.35 c.55.1.11,c.55.1.11 114406,114407 1rtqA 299 39.94 c.56.5.4 97819 1pzxA 289 40.18 c.119.1.1 95484 1nktA 922 40.25 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 2p7iA 250 40.41 2dbsA 90 40.94 1eovA 487 41.41 b.40.4.1,d.104.1.1 25239,40760 1vid 221 41.68 2bogX 286 44.75 1vquA 374 44.83 1j9iA 68 45.74 a.6.1.5 71619 2liv 344 47.05 3bwyA 214 48.93 1k4mA 213 49.47 c.26.1.3 77258 1xs5A 241 49.60 c.94.1.1 115912 2rbbA 141 51.30 2i62A 265 51.79 1dzfA 215 56.31 c.52.3.1,d.78.1.1 33344,39753 2a61A 145 56.73 a.4.5.28 126187 2a4xA 138 56.79 d.32.1.2 126166 2p7oA 133 57.18 1lokA 291 57.26 c.56.5.4 78122 1vjqA 79 57.88 k.43.1.1 100830 2ashA 381 60.67 1jeoA 180 60.84 c.80.1.3 66611 1xa3A 437 61.09 c.123.1.1 115025 2b4lA 268 62.06 1ne7A 289 71.16 c.124.1.1 91833 1r9cA 139 71.52 d.32.1.2 97255 1nv8A 284 72.91 c.66.1.30 86224 1ksoA 101 73.46 a.39.1.2 72926 2bylA 439 74.69 c.67.1.4 129490 2z4sA 440 74.82 2cx7A 130 76.06 1ad4A 266 76.79 c.1.21.1 29670 1ro0A 216 78.42 d.264.1.2 97664 2fshA 853 79.01 1h1dA 221 80.51 c.66.1.1 83452 1amp 291 80.66 1yumA 242 80.75 1aszB 490 80.94 b.40.4.1,d.104.1.1 25241,40762 2fpoA 202 83.82 c.66.1.46 133909 2ob5A 153 84.22 1lt8A 406 85.50 c.1.26.1 78186 1lvl 458 87.06 2hjvA 163 87.42 2c3zA 222 89.74 1aqjA 421 89.76 c.66.1.27,d.287.1.1 111563,111564 1ta0A 197 89.80 c.108.1.16 106729