# List of top-scoring protein chains for T0493.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 2.04e-27 1pjrA 724 7.18e-27 c.37.1.19,c.37.1.19 32391,32392 1uaaA 673 5.29e-25 c.37.1.19,c.37.1.19 32401,32402 2pjrB 95 1.22e-14 1qhhD 169 4.38e-14 1qhhB 273 1.38e-13 2pjrA 548 2.27e-11 c.37.1.19,c.37.1.19 32395,32396 1w36D 608 2.55e-10 c.37.1.19,c.37.1.19 114128,114129 1w36B 1180 3.74e-09 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 6.17e-09 2p6nA 191 0.4726 1o7lA 262 1.319 a.4.5.8,b.40.6.2,b.40.6.2 81147,81148,81149 1b9mA 265 1.363 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2hjvA 163 2.583 2gjfA 78 2.842 2hrdA 253 3.000 2oxfA 250 3.005 2i8aA 252 3.012 2a30A 248 4.424 2j0uB 374 4.452 1k1xA 659 5.426 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1z0sA 278 6.408 e.52.1.1 124328 1rxyA 253 6.740 c.56.2.1 98065 1oyiA 82 7.182 a.4.5.19 93729 1u1gA 256 7.482 c.56.2.1 119445 1suwA 249 9.019 e.52.1.1 106027 2pjmA 226 9.104 2j0uA 374 9.128 1zjjA 263 9.307 1um5H 217 9.518 b.1.1.1,b.1.1.2 113302,113303 2jbhA 225 9.848 1i7qB 193 11.04 c.23.16.1 61902 2cztA 167 11.90 2pzoE 42 12.01 1p5zB 263 12.90 c.37.1.1 87815 2e4jA 167 13.11 2jgnA 185 13.91 1vjqA 79 14.20 k.43.1.1 100830 1ktnA 250 16.80 c.1.10.1 72988 1y8aA 332 17.34 2icnB 118 17.92 1l9yA 263 18.39 d.157.1.1 84574 1k07A 263 18.67 d.157.1.1 77218 1r31A 428 19.47 d.58.20.1,d.179.1.1 96897,96898 2v8oA 444 20.44 2qrnA 280 21.72 1je0A 236 23.55 c.56.2.1 66581 2zi6A 279 24.15 2zi3A 279 24.45 2rb4A 175 25.18 2no7A 280 25.70 2hxyA 391 25.79 2fprA 176 27.61 c.108.1.19 133919 2a9dA 372 29.78 b.1.18.6,d.176.1.1 126431,126432 1p1xA 260 33.65 c.1.10.1 104060 1mhpA 192 33.78 c.62.1.1 84965 2a9aA 372 33.90 b.1.18.6,d.176.1.1 126427,126428 1i1qB 192 34.24 c.23.16.1 61544 2a9bA 372 34.36 b.1.18.6,d.176.1.1 126429,126430 2hxiA 241 34.57 2ip4A 417 35.09 1jcjA 260 35.28 c.1.10.1 66499 1o5iA 249 39.11 c.2.1.2 92499 2o1xA 629 39.38 1nytA 271 40.02 c.2.1.7,c.58.1.5 86417,86418 1q8iA 783 40.95 c.55.3.5,e.8.1.1 96208,96209 2qeqA 434 43.26 2i04A 85 43.84 2hpkA 208 45.42 1c9wA 315 47.26 c.1.7.1 28699 2pgnA 589 47.84 2ocpA 241 51.79 c.37.1.1 139012 1mnuH 225 52.05 b.1.1.1,b.1.1.2 20359,21351 1aw9A 216 54.61 a.45.1.1,c.47.1.5 17736,33030 1bccC 380 54.64 f.32.1.1,f.21.1.2 75803,75804 2no8A 86 57.07 2fo3A 125 58.05 d.20.1.1 133868 2cjwA 192 59.62 1g2oA 268 60.90 c.56.2.1 60228 2dyyA 126 64.57 2p0sA 143 64.83 1s1i0 130 66.04 1ck4A 198 66.48 c.62.1.1 34149 1qyiA 384 66.95 c.108.1.13 96595 5easA 548 68.55 a.102.4.1,a.128.1.3 18852,19444 1qysA 106 68.72 k.41.1.1 96603 3clkA 290 68.92 1qhhA 167 70.05 c.37.1.19 32393 5eatA 548 71.80 a.102.4.1,a.128.1.3 18853,19445 2erhA 87 73.98 2z83A 459 75.54 2yyuA 246 76.06 2nnbA 471 76.68 1dbxA 158 77.54 d.116.1.1 40928 1mzgA 146 78.83 d.224.1.1 79696 1fahA 471 80.42 a.104.1.1 18945 2hpdA 471 80.45 a.104.1.1 18939 1smiA 471 80.58 a.104.1.1 105758 2ij3A 470 82.63 2ij2A 470 82.66 a.104.1.1 137449 2ij4A 470 82.81 1k1eA 180 83.79 c.108.1.5 67995 2pezA 179 84.44 1anxA 319 84.74 a.65.1.1 18161 1hveA 319 85.35 a.65.1.1 18156 2h32H 223 86.16 1e8cA 498 88.21 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379