# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 2.15e-19 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 6.40e-19 1pjr 724 6.58e-19 1w36B 1180 1.23e-15 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 4.62e-13 1w36C 1122 1.61e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 0.05381 1fukA 165 0.05498 c.37.1.19 32409 1t5iA 172 0.08530 c.37.1.19 106450 1oywA 523 0.6995 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2jgnA 185 1.060 1usgA 346 1.124 c.93.1.1 99864 1z15A 344 2.491 1peaA 385 2.740 c.93.1.1 35662 1yksA 440 2.855 c.37.1.14,c.37.1.14 123561,123562 2v1xA 591 3.030 1v25A 541 3.474 e.23.1.1 108275 2j0eA 266 3.887 3ckmA 327 3.925 3ch7A 266 4.460 3cssA 267 4.650 1pea 385 5.101 1vjqA 79 7.146 k.43.1.1 100830 2d13A 227 7.249 c.26.2.1 131121 1tc1A 220 7.260 c.61.1.1 34083 8abp 306 7.367 1wviA 257 7.449 c.108.1.14 114915 1m3sA 186 8.074 c.80.1.3 78573 1vimA 200 9.446 c.80.1.3 100758 1fs5A 266 9.910 c.124.1.1 65044 2dxnA 274 11.09 2v8oA 444 11.15 1z5zA 271 11.32 c.37.1.19 124499 3borA 237 12.00 2bmfA 451 12.18 c.37.1.14,c.37.1.14 128791,128792 2hmaA 376 12.55 1o57A 291 12.70 a.4.5.40,c.61.1.1 92483,92484 1amuA 563 12.94 e.23.1.1 43351 3brqA 296 13.04 2ioyA 283 13.05 2va8A 715 13.44 2vl7A 540 14.72 1vl1A 232 14.93 c.124.1.1 108707 8abpA 306 15.18 c.93.1.1 35647 1jdpA 441 15.33 c.93.1.1 62906 1va0A 239 18.14 c.90.1.1 119899 2z83A 459 18.53 1ne7A 289 19.02 c.124.1.1 91833 2oxcA 230 19.29 2h4aA 325 19.68 2hcrA 326 20.11 3d02A 303 20.25 2dri 271 20.41 2bsnA 145 20.43 2o4cA 380 20.58 1y0bA 197 20.75 c.61.1.1 122476 1jeoA 180 21.98 c.80.1.3 66611 2rjoA 332 22.13 3bblA 287 22.62 3cb6A 444 23.30 1ve2A 235 23.76 c.90.1.1 120008 2qvcA 313 24.02 2z0mA 337 24.99 2d1sA 548 25.39 1t5hX 504 26.74 e.23.1.1 106449 2e4uA 555 26.75 1e58A 249 26.97 c.60.1.1 59262 1q0uA 219 27.00 c.37.1.19 95512 2dekA 265 27.25 c.90.1.1 131430 1htwA 158 27.70 c.37.1.18 71083 1gudA 288 27.98 c.93.1.1 83326 1hgxA 183 28.35 c.61.1.1 34027 2pl3A 236 28.60 2npnA 251 28.92 1qxyA 252 29.19 d.127.1.1 96565 1y89A 238 29.29 1dbqA 289 29.39 c.93.1.1 35666 2bw0A 329 29.43 b.46.1.1,c.65.1.1 129303,129304 1uxy 340 29.45 2g1uA 155 30.07 1vecA 206 31.58 c.37.1.19 100575 1t6nA 220 32.29 c.37.1.19 106576 2fqxA 318 35.06 1w24A 182 35.15 d.159.1.7 120579 1uxyA 340 35.99 d.145.1.2,d.146.1.1 41748,41761 1g2qA 187 36.01 c.61.1.1 65117 1wd5A 208 36.66 c.61.1.1 114524 2yvqA 143 37.48 1wurA 220 38.74 d.96.1.1 121309 2h88A 621 39.73 2fn9A 290 39.75 1ka9H 200 40.52 c.23.16.1 77308 2v7bA 529 40.69 2ahdA 165 42.00 d.159.1.7 126752 2gukA 120 42.48 3crvA 551 43.23 1xknA 355 43.56 d.126.1.6 115414 1sfxA 109 43.83 a.4.5.50 105505 1qdeA 224 43.85 c.37.1.19 32410 3berA 249 43.96 2fvyA 309 44.68 c.93.1.1 134227 1jyeA 349 44.94 c.93.1.1 67455 2pi1A 334 44.94 2rgyA 290 45.86 1hskA 326 46.72 d.145.1.2,d.146.1.1 61241,61242 1k07A 263 46.77 d.157.1.1 77218 1d2mA 665 46.96 c.37.1.19,c.37.1.19 32417,32418 2driA 271 47.80 c.93.1.1 35637 2a22A 215 48.63 d.159.1.7 126025 1aw2A 256 48.87 c.1.1.1 28523 2p5mA 83 50.22 1g94A 448 50.77 b.71.1.1,c.1.8.1 65169,65170 3bh1A 507 51.38 1nulA 152 51.89 c.61.1.1 34011 2ywjA 186 52.19 3bueA 79 52.25 1mdbA 539 52.35 e.23.1.1 79008 1gmuA 143 54.77 b.107.1.1,d.58.38.1 65335,65336 3brcA 156 54.89 1heiA 451 55.03 c.37.1.14,c.37.1.14 32463,32464 1rvv1 154 55.09 1bykA 255 58.69 c.93.1.1 35706 1hf2A 210 59.75 b.80.3.1,c.102.1.1 60992,60993 1c4oA 664 59.93 c.37.1.19,c.37.1.19 32415,32416 1pj5A 830 61.25 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1l3iA 192 62.26 c.66.1.22 77676 2ho4A 259 64.29 1xb4A 202 65.08 a.4.5.54,a.4.5.54 121832,121833 2e18A 257 66.39 1jk7A 323 66.48 d.159.1.3 63144 1b4bA 71 66.95 d.74.2.1 39718 1fo8A 343 67.67 c.68.1.10 59927 2gxqA 207 69.53 2napA 723 70.83 b.52.2.2,c.81.1.1 26926,35334 1hx0A 496 71.50 b.71.1.1,c.1.8.1 61346,61347 1xi3A 215 71.55 c.1.3.1 109601 2jbhA 225 71.68 1rlkA 117 71.85 c.131.1.1 97651 1xbyA 216 73.01 c.1.2.3 121846 1qhfA 240 73.22 c.60.1.1 33960 2c4nA 250 75.64 c.108.1.14 129837 1luaA 287 76.66 c.2.1.7,c.58.1.4 78216,78217 1vp8A 201 77.09 c.49.1.2 113947 1z2wA 192 77.11 d.159.1.7 124390 1b5pA 385 77.92 c.67.1.1 90403 2mbrA 340 78.12 d.145.1.2,d.146.1.1 41749,41762 1zr6A 503 80.69 1zjcA 418 81.18 e.60.1.1 125147 1q7sA 117 81.51 c.131.1.1 96055 2bkxA 242 81.55 2gmnA 274 81.56 1ewkA 490 81.70 c.93.1.1 35712 1hqkA 154 81.82 c.16.1.1 65902 1w30A 201 82.24 c.61.1.1 114118 3by5A 155 82.27 2yvtA 260 82.59 2dy0A 190 82.63 1gsa 316 82.90 2fepA 289 87.08