# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 6.44e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 2.37e-19 2is6A 680 3.85e-19 1w36B 1180 8.59e-16 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 1.97e-13 1w36C 1122 5.88e-13 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 0.07048 1t5iA 172 0.1031 c.37.1.19 106450 1fukA 165 0.1129 c.37.1.19 32409 1oywA 523 0.4787 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2jgnA 185 0.7031 1v25A 541 0.9289 e.23.1.1 108275 1usgA 346 1.130 c.93.1.1 99864 1peaA 385 1.612 c.93.1.1 35662 2v1xA 591 1.632 1z15A 344 2.520 3ckmA 327 2.706 1yksA 440 3.121 c.37.1.14,c.37.1.14 123561,123562 1pea 385 4.222 3ch7A 266 5.161 2v8oA 444 6.250 1tc1A 220 6.905 c.61.1.1 34083 1wviA 257 6.937 c.108.1.14 114915 8abp 306 7.155 1vjqA 79 8.216 k.43.1.1 100830 3cssA 267 8.500 1o57A 291 10.00 a.4.5.40,c.61.1.1 92483,92484 2j0eA 266 10.09 3borA 237 11.75 8abpA 306 11.82 c.93.1.1 35647 1va0A 239 12.29 c.90.1.1 119899 2dxnA 274 12.50 2vl7A 540 13.13 2npnA 251 13.90 2e4uA 555 14.07 1ne7A 289 14.37 c.124.1.1 91833 1fs5A 266 15.61 c.124.1.1 65044 2va8A 715 16.12 1amuA 563 16.79 e.23.1.1 43351 1m3sA 186 17.20 c.80.1.3 78573 1w24A 182 18.80 d.159.1.7 120579 1jdpA 441 19.25 c.93.1.1 62906 2dekA 265 19.86 c.90.1.1 131430 1q0uA 219 20.52 c.37.1.19 95512 2oxcA 230 20.81 2h4aA 325 20.94 1t6nA 220 20.99 c.37.1.19 106576 3cb6A 444 21.11 1dbqA 289 21.21 c.93.1.1 35666 2gxqA 207 21.25 2d13A 227 21.38 c.26.2.1 131121 2g1uA 155 21.64 2bmfA 451 21.65 c.37.1.14,c.37.1.14 128791,128792 1vimA 200 22.25 c.80.1.3 100758 2d1sA 548 23.64 3brqA 296 23.85 1k07A 263 24.01 d.157.1.1 77218 2fqxA 318 25.16 1rvv1 154 25.22 1vecA 206 25.42 c.37.1.19 100575 1t5hX 504 25.59 e.23.1.1 106449 2dri 271 27.49 2hmaA 376 28.01 2ioyA 283 29.17 1qdeA 224 29.93 c.37.1.19 32410 1z5zA 271 29.95 c.37.1.19 124499 1vl1A 232 30.67 c.124.1.1 108707 1d2mA 665 31.45 c.37.1.19,c.37.1.19 32417,32418 1htwA 158 31.93 c.37.1.18 71083 1aw2A 256 32.05 c.1.1.1 28523 2rjoA 332 32.09 1y89A 238 32.87 1e58A 249 32.96 c.60.1.1 59262 1hgxA 183 33.99 c.61.1.1 34027 3d02A 303 34.54 1jk7A 323 34.81 d.159.1.3 63144 1ii7A 333 34.98 d.159.1.4 62415 1jeoA 180 36.42 c.80.1.3 66611 2z83A 459 36.55 1ve2A 235 36.63 c.90.1.1 120008 1heiA 451 36.94 c.37.1.14,c.37.1.14 32463,32464 2pl3A 236 37.54 2a22A 215 38.71 d.159.1.7 126025 1uxyA 340 38.74 d.145.1.2,d.146.1.1 41748,41761 3crvA 551 38.74 1uxy 340 39.56 1b9bA 255 40.14 c.1.1.1 28531 2qvcA 313 40.28 1z2wA 192 41.22 d.159.1.7 124390 3bblA 287 43.01 2fn9A 290 43.05 2z0mA 337 44.88 2h88A 621 44.93 2napA 723 45.33 b.52.2.2,c.81.1.1 26926,35334 1jb0E 75 45.47 b.34.4.2 62824 1luaA 287 46.08 c.2.1.7,c.58.1.4 78216,78217 2yvqA 143 46.38 2rgyA 290 46.76 2ahdA 165 48.30 d.159.1.7 126752 2i6uA 307 48.92 1hqkA 154 49.41 c.16.1.1 65902 2dy0A 190 49.50 2mbrA 340 50.13 d.145.1.2,d.146.1.1 41749,41762 2bw0A 329 51.27 b.46.1.1,c.65.1.1 129303,129304 1l3iA 192 51.75 c.66.1.22 77676 2hcrA 326 52.50 2v7bA 529 52.57 1jyeA 349 53.28 c.93.1.1 67455 1ka9H 200 53.32 c.23.16.1 77308 1y0bA 197 54.50 c.61.1.1 122476 2gukA 120 54.53 2fvyA 309 55.13 c.93.1.1 134227 1qxyA 252 55.17 d.127.1.1 96565 2jbhA 225 55.41 3brcA 156 58.17 3bueA 79 58.38 2qbuA 232 59.03 1g2qA 187 59.20 c.61.1.1 65117 1vdmA 153 59.38 c.61.1.1 119994 1c4oA 664 59.88 c.37.1.19,c.37.1.19 32415,32416 2i4iA 417 61.12 2p5mA 83 61.25 2gmnA 274 61.48 2o4cA 380 61.98 1gmuA 143 62.76 b.107.1.1,d.58.38.1 65335,65336 3berA 249 63.10 1gudA 288 63.78 c.93.1.1 83326 2db3A 434 64.60 1js1X 324 64.66 c.78.1.1,c.78.1.1 71834,71835 1g94A 448 65.47 b.71.1.1,c.1.8.1 65169,65170 1vp8A 201 66.45 c.49.1.2 113947 1hskA 326 66.90 d.145.1.2,d.146.1.1 61241,61242 1sfxA 109 67.55 a.4.5.50 105505 1zjcA 418 69.45 e.60.1.1 125147 1ml4A 308 69.53 c.78.1.1,c.78.1.1 79255,79256 1zq6A 359 70.61 1gs5A 258 73.67 c.73.1.2 70395 1xxaA 78 74.02 d.74.2.1 39700 1v60A 123 75.30 2joqA 91 75.74 1u3dA 509 76.65 a.99.1.1,c.28.1.1 107638,107639 1wurA 220 76.74 d.96.1.1 121309 2ef0A 301 78.75 1ej2A 181 78.87 c.26.1.3 59414 1nulA 152 79.53 c.61.1.1 34011 2bsnA 145 80.57 1ewkA 490 82.07 c.93.1.1 35712 1hx0A 496 83.55 b.71.1.1,c.1.8.1 61346,61347 1ls6A 295 84.24 c.37.1.5 91115 3b6eA 216 84.82 2igbA 179 86.52 1zr6A 503 86.53 1xknA 355 87.68 d.126.1.6 115414