# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 1.08e-21 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 4.64e-21 2is6A 680 5.99e-21 1w36B 1180 1.88e-16 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 1.39e-14 1w36C 1122 2.30e-13 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 0.02948 1t5iA 172 0.08618 c.37.1.19 106450 1fukA 165 0.1015 c.37.1.19 32409 2v1xA 591 0.3937 2jgnA 185 0.7407 1oywA 523 1.033 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yksA 440 1.980 c.37.1.14,c.37.1.14 123561,123562 1v25A 541 2.111 e.23.1.1 108275 2v8oA 444 2.212 8abp 306 2.247 1wviA 257 3.388 c.108.1.14 114915 1vimA 200 3.406 c.80.1.3 100758 1m3sA 186 3.843 c.80.1.3 78573 8abpA 306 4.066 c.93.1.1 35647 1vjqA 79 4.419 k.43.1.1 100830 2bmfA 451 4.883 c.37.1.14,c.37.1.14 128791,128792 2z0mA 337 5.021 1fs5A 266 5.116 c.124.1.1 65044 1usgA 346 5.449 c.93.1.1 99864 3borA 237 5.490 3cssA 267 5.866 3ch7A 266 5.948 2vl7A 540 6.116 2dekA 265 6.889 c.90.1.1 131430 2va8A 715 7.124 1vecA 206 8.993 c.37.1.19 100575 2gxqA 207 9.006 1va0A 239 10.27 c.90.1.1 119899 2d13A 227 10.27 c.26.2.1 131121 2z83A 459 10.77 1z15A 344 10.93 3berA 249 11.14 3d02A 303 11.61 1htwA 158 11.66 c.37.1.18 71083 2hy1A 280 11.76 1g94A 448 12.15 b.71.1.1,c.1.8.1 65169,65170 1q0uA 219 12.38 c.37.1.19 95512 1rvv1 154 13.01 1ne7A 289 13.86 c.124.1.1 91833 2j0eA 266 14.42 1jeoA 180 14.64 c.80.1.3 66611 1k07A 263 14.86 d.157.1.1 77218 2ioyA 283 15.73 1gudA 288 15.87 c.93.1.1 83326 2yvqA 143 16.23 1peaA 385 16.40 c.93.1.1 35662 1amuA 563 16.51 e.23.1.1 43351 2dri 271 16.99 1t5hX 504 17.39 e.23.1.1 106449 1z5zA 271 17.99 c.37.1.19 124499 1e58A 249 18.34 c.60.1.1 59262 2pl3A 236 18.99 1t6nA 220 19.29 c.37.1.19 106576 1tc1A 220 19.37 c.61.1.1 34083 1qdeA 224 19.56 c.37.1.19 32410 2qvcA 313 19.81 2i4iA 417 20.38 3bblA 287 20.42 2gukA 120 20.52 1sfxA 109 20.91 a.4.5.50 105505 2dxnA 274 21.04 1qysA 106 21.10 k.41.1.1 96603 2yvtA 260 24.72 2d1sA 548 25.37 2oxcA 230 25.42 1pea 385 27.09 2qbuA 232 27.37 2driA 271 27.56 c.93.1.1 35637 2rjoA 332 27.57 1s8eA 333 29.30 d.159.1.4 105368 3brsA 289 29.38 2gmnA 274 30.95 1hx0A 496 32.21 b.71.1.1,c.1.8.1 61346,61347 2fn9A 290 32.56 1gmuA 143 33.21 b.107.1.1,d.58.38.1 65335,65336 1ii7A 333 33.41 d.159.1.4 62415 2nxfA 322 34.26 1pcaA 95 34.34 d.58.3.1 39063 2pn1A 331 34.43 1pj5A 830 34.66 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2p5mA 83 34.71 3by5A 155 34.89 2hcrA 326 35.47 2fqxA 318 35.59 1u3dA 509 37.38 a.99.1.1,c.28.1.1 107638,107639 1qxyA 252 37.93 d.127.1.1 96565 1y0bA 197 37.97 c.61.1.1 122476 1u11A 182 38.35 c.23.8.1 107576 1uxy 340 39.01 1ve2A 235 39.15 c.90.1.1 120008 3ckmA 327 39.35 1xm8A 254 39.37 d.157.1.2 115475 2dy0A 190 41.79 2g1uA 155 42.23 1jb0E 75 43.75 b.34.4.2 62824 2ahdA 165 43.98 d.159.1.7 126752 1xi3A 215 44.11 c.1.3.1 109601 2npnA 251 44.55 1mdbA 539 45.10 e.23.1.1 79008 1gsa 316 45.55 2joqA 91 45.74 1vdmA 153 47.34 c.61.1.1 119994 1jdpA 441 47.52 c.93.1.1 62906 1cbfA 285 47.59 c.90.1.1 35587 1rkqA 282 48.89 c.108.1.10 97621 2db3A 434 49.02 2fvyA 309 50.32 c.93.1.1 134227 3brqA 296 50.49 1b4bA 71 51.89 d.74.2.1 39718 1y8cA 246 53.06 c.66.1.43 116563 1iyeA 309 54.62 e.17.1.1 83786 3cb6A 444 54.77 3brcA 156 54.78 2rebA 352 56.02 c.37.1.11,d.48.1.1 32282,38767 1hf2A 210 56.24 b.80.3.1,c.102.1.1 60992,60993 1o57A 291 56.28 a.4.5.40,c.61.1.1 92483,92484 1heiA 451 56.56 c.37.1.14,c.37.1.14 32463,32464 1pytA 94 56.59 d.58.3.1 39064 1g2qA 187 57.27 c.61.1.1 65117 1lzlA 323 57.65 c.69.1.2 78306 1q0qA 406 58.24 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1uxyA 340 58.62 d.145.1.2,d.146.1.1 41748,41761 1wd5A 208 58.74 c.61.1.1 114524 2eiyA 308 59.48 1d2mA 665 59.65 c.37.1.19,c.37.1.19 32417,32418 1xb4A 202 60.24 a.4.5.54,a.4.5.54 121832,121833 1ka9H 200 60.52 c.23.16.1 77308 2mbrA 340 61.29 d.145.1.2,d.146.1.1 41749,41762 3crvA 551 61.47 1vl1A 232 62.32 c.124.1.1 108707 2r00A 336 63.09 2v7bA 529 63.62 1w24A 182 63.75 d.159.1.7 120579 2bkxA 242 63.85 1yj7A 171 63.87 1hqkA 154 64.20 c.16.1.1 65902 1bykA 255 64.66 c.93.1.1 35706 1rlkA 117 64.77 c.131.1.1 97651 3cs3A 277 65.79 2hmaA 376 65.99 2rbkA 261 69.40 1wn2A 121 69.43 1l3iA 192 69.56 c.66.1.22 77676 3bueA 79 70.59 1aw2A 256 70.92 c.1.1.1 28523 2h4aA 325 71.15 2o4cA 380 71.41 1pg4A 652 73.79 e.23.1.1 88067 1qhfA 240 74.78 c.60.1.1 33960 2yvuA 186 75.07 1zd0A 150 75.28 d.329.1.1 124927 2bsnA 145 75.43 2e18A 257 76.17 1xxlA 239 76.42 c.66.1.41 116203 2pjmA 226 77.39 2nzcA 86 77.47 1np7A 489 78.43 a.99.1.1,c.28.1.1 80677,80678 2bjbA 462 78.76 1q7sA 117 78.85 c.131.1.1 96055 1riiA 265 78.98 c.60.1.1 111807 1o4vA 183 79.06 c.23.8.1 86628 1wurA 220 79.18 d.96.1.1 121309 1jk7A 323 79.73 d.159.1.3 63144 1nytA 271 80.10 c.2.1.7,c.58.1.5 86417,86418 2rk0A 136 80.17 2obxA 157 81.74 1gca 309 82.57 1earA 147 84.11 b.107.1.1,d.58.38.1 64875,64876 1zjcA 418 85.27 e.60.1.1 125147 1luaA 287 85.41 c.2.1.7,c.58.1.4 78216,78217 1qczA 169 86.45 c.23.8.1 31276 2cc0A 195 88.51 c.6.2.3 130209 2qiwA 255 88.59 2ei9A 240 89.88 1y89A 238 90.00