# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 3.17e-21 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 1.11e-20 2is6A 680 1.51e-20 1w36B 1180 4.53e-17 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 3.33e-14 1w36C 1122 1.21e-13 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 0.03432 1fukA 165 0.05601 c.37.1.19 32409 1t5iA 172 0.07710 c.37.1.19 106450 2jgnA 185 0.7653 1usgA 346 1.392 c.93.1.1 99864 1v25A 541 1.769 e.23.1.1 108275 1yksA 440 2.435 c.37.1.14,c.37.1.14 123561,123562 1wviA 257 2.716 c.108.1.14 114915 1oywA 523 2.887 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 3ch7A 266 3.351 1vimA 200 3.769 c.80.1.3 100758 1z15A 344 3.780 2v1xA 591 4.055 2j0eA 266 4.321 1m3sA 186 4.384 c.80.1.3 78573 2va8A 715 4.399 3ckmA 327 4.574 8abp 306 4.678 3cssA 267 4.756 8abpA 306 4.990 c.93.1.1 35647 1vjqA 79 5.636 k.43.1.1 100830 1l3iA 192 5.987 c.66.1.22 77676 1tc1A 220 7.148 c.61.1.1 34083 1fs5A 266 8.136 c.124.1.1 65044 1peaA 385 8.671 c.93.1.1 35662 3brqA 296 9.396 2ioyA 283 9.881 3borA 237 10.50 1vl1A 232 12.20 c.124.1.1 108707 2bmfA 451 12.97 c.37.1.14,c.37.1.14 128791,128792 2hmaA 376 13.63 1xknA 355 14.33 d.126.1.6 115414 2v8oA 444 14.42 2vl7A 540 14.49 1qdeA 224 14.50 c.37.1.19 32410 1va0A 239 14.94 c.90.1.1 119899 3d02A 303 15.06 1jeoA 180 15.68 c.80.1.3 66611 1d2mA 665 16.18 c.37.1.19,c.37.1.19 32417,32418 2oxcA 230 16.50 3cb6A 444 17.98 1e58A 249 18.34 c.60.1.1 59262 2z83A 459 18.44 2dxnA 274 18.44 1qxyA 252 18.53 d.127.1.1 96565 2qvcA 313 18.54 2dri 271 18.93 2fn9A 290 20.43 1pea 385 20.59 2hcrA 326 21.53 1o57A 291 21.56 a.4.5.40,c.61.1.1 92483,92484 2d13A 227 21.85 c.26.2.1 131121 1qysA 106 22.29 k.41.1.1 96603 2h4aA 325 23.38 1y89A 238 23.81 2qbuA 232 24.26 2rjoA 332 24.29 1y0bA 197 24.99 c.61.1.1 122476 1wurA 220 25.46 d.96.1.1 121309 2bjbA 462 25.51 3bblA 287 26.20 1amuA 563 26.68 e.23.1.1 43351 1t6nA 220 26.71 c.37.1.19 106576 2gukA 120 26.72 2pl3A 236 26.79 1z5zA 271 26.84 c.37.1.19 124499 1vecA 206 26.93 c.37.1.19 100575 3brcA 156 28.49 1w24A 182 28.81 d.159.1.7 120579 2jbhA 225 29.85 2driA 271 30.77 c.93.1.1 35637 2rgyA 290 30.85 1q0uA 219 30.85 c.37.1.19 95512 1jb0E 75 31.57 b.34.4.2 62824 1q7sA 117 31.75 c.131.1.1 96055 2p5mA 83 32.20 1hgxA 183 33.04 c.61.1.1 34027 2dekA 265 33.84 c.90.1.1 131430 1ne7A 289 35.11 c.124.1.1 91833 2gxqA 207 35.53 1k07A 263 35.61 d.157.1.1 77218 1jdpA 441 35.86 c.93.1.1 62906 1b4bA 71 37.30 d.74.2.1 39718 1ve2A 235 37.47 c.90.1.1 120008 1b5pA 385 37.78 c.67.1.1 90403 3bueA 79 38.15 1g2qA 187 38.67 c.61.1.1 65117 2e4uA 555 39.44 3crvA 551 41.33 2fvyA 309 42.15 c.93.1.1 134227 2qaiA 111 42.16 2bkxA 242 43.08 2a22A 215 43.85 d.159.1.7 126025 1htwA 158 44.02 c.37.1.18 71083 2ahdA 165 44.13 d.159.1.7 126752 1sfxA 109 44.75 a.4.5.50 105505 1x8hA 228 45.60 d.157.1.1 114961 1t5hX 504 45.95 e.23.1.1 106449 1ly1A 181 45.96 c.37.1.1 74334 2bw0A 329 46.26 b.46.1.1,c.65.1.1 129303,129304 1rvv1 154 46.93 2ax4A 198 47.40 3berA 249 47.93 1gmuA 143 48.77 b.107.1.1,d.58.38.1 65335,65336 1g94A 448 50.02 b.71.1.1,c.1.8.1 65169,65170 1ii7A 333 50.32 d.159.1.4 62415 1ej2A 181 50.43 c.26.1.3 59414 1xi3A 215 51.35 c.1.3.1 109601 1rlkA 117 51.57 c.131.1.1 97651 1aw2A 256 51.92 c.1.1.1 28523 2yvqA 143 53.07 1jk7A 323 53.53 d.159.1.3 63144 1ro0A 216 53.65 d.264.1.2 97664 1zjcA 418 53.93 e.60.1.1 125147 2zfzA 79 55.13 1o4sA 389 55.16 c.67.1.1 86620 2omdA 154 55.52 1wd5A 208 56.30 c.61.1.1 114524 2ho4A 259 56.51 1lzlA 323 58.16 c.69.1.2 78306 1gs5A 258 58.74 c.73.1.2 70395 1w30A 201 58.79 c.61.1.1 114118 1uxy 340 58.88 1bykA 255 60.33 c.93.1.1 35706 1pj5A 830 61.06 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2douA 376 63.07 1mdbA 539 63.13 e.23.1.1 79008 1ro2A 216 63.62 d.264.1.2 97665 3bosA 242 65.05 2npnA 251 66.49 1qtwA 285 67.12 c.1.15.1 29392 1pg4A 652 67.35 e.23.1.1 88067 3b6eA 216 67.46 1vp2A 208 68.70 c.51.4.1 113933 1gsa 316 69.53 2okgA 255 69.72 1xxaA 78 70.49 d.74.2.1 39700 1a3c 181 70.51 2yysA 286 70.83 2nxfA 322 71.72 1y8cA 246 73.36 c.66.1.43 116563 2z0mA 337 73.57 2dy0A 190 76.70 1wn2A 121 77.94 1heiA 451 78.10 c.37.1.14,c.37.1.14 32463,32464 2bsnA 145 78.22 2r00A 336 78.87 2hjsA 340 79.45 c.2.1.3,d.81.1.1 136547,136548 2h3gX 268 79.89 1dbqA 289 80.37 c.93.1.1 35666 2fepA 289 81.04 2h88A 621 81.21 2o4cA 380 82.78 1oaaA 259 82.80 c.2.1.2 29829 2hmvA 144 82.93 c.2.1.9 136615 2blnA 305 83.51 b.46.1.1,c.65.1.1 128734,128735 2yvuA 186 83.56 3bijA 285 83.95 2igbA 179 84.92 2eiyA 308 86.76 1vp8A 201 88.62 c.49.1.2 113947 2fphX 165 89.75