# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 1.08e-21 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 3.98e-21 2is6A 680 5.92e-21 1w36B 1180 2.17e-17 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 2.10e-14 1w36C 1122 6.76e-14 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 0.02186 1fukA 165 0.03187 c.37.1.19 32409 1t5iA 172 0.04274 c.37.1.19 106450 2jgnA 185 0.4925 1usgA 346 1.208 c.93.1.1 99864 1yksA 440 2.069 c.37.1.14,c.37.1.14 123561,123562 1v25A 541 2.271 e.23.1.1 108275 1oywA 523 2.395 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wviA 257 2.684 c.108.1.14 114915 1z15A 344 3.038 1vimA 200 3.449 c.80.1.3 100758 3ckmA 327 4.091 2va8A 715 4.130 1m3sA 186 4.184 c.80.1.3 78573 3ch7A 266 4.502 8abp 306 4.603 2j0eA 266 4.938 1l3iA 192 5.511 c.66.1.22 77676 8abpA 306 5.621 c.93.1.1 35647 1vjqA 79 5.945 k.43.1.1 100830 3cssA 267 6.278 2v1xA 591 6.370 1peaA 385 6.601 c.93.1.1 35662 1tc1A 220 7.101 c.61.1.1 34083 1fs5A 266 8.802 c.124.1.1 65044 3brqA 296 9.818 1vl1A 232 9.877 c.124.1.1 108707 2ioyA 283 10.48 3borA 237 10.50 2hmaA 376 11.38 1xknA 355 12.17 d.126.1.6 115414 2bmfA 451 12.58 c.37.1.14,c.37.1.14 128791,128792 3cb6A 444 13.11 1e58A 249 13.16 c.60.1.1 59262 2hcrA 326 13.55 2v8oA 444 14.28 2vl7A 540 14.46 1va0A 239 14.59 c.90.1.1 119899 1jeoA 180 14.61 c.80.1.3 66611 3d02A 303 15.62 1d2mA 665 16.28 c.37.1.19,c.37.1.19 32417,32418 1pea 385 16.62 2dri 271 18.13 2dxnA 274 18.93 2z83A 459 19.02 1z5zA 271 19.04 c.37.1.19 124499 2rjoA 332 19.79 1o57A 291 19.88 a.4.5.40,c.61.1.1 92483,92484 2qvcA 313 20.18 1qdeA 224 20.32 c.37.1.19 32410 3bblA 287 21.55 1y0bA 197 21.82 c.61.1.1 122476 2fn9A 290 21.86 2oxcA 230 22.70 1jdpA 441 23.99 c.93.1.1 62906 1qxyA 252 24.22 d.127.1.1 96565 1amuA 563 24.24 e.23.1.1 43351 1y89A 238 24.80 2qbuA 232 25.74 2gukA 120 25.86 2d13A 227 25.92 c.26.2.1 131121 1wurA 220 26.38 d.96.1.1 121309 2h4aA 325 26.43 1w24A 182 26.94 d.159.1.7 120579 2ahdA 165 27.55 d.159.1.7 126752 2driA 271 27.90 c.93.1.1 35637 3bueA 79 29.14 1hgxA 183 29.16 c.61.1.1 34027 2jbhA 225 29.56 2dekA 265 29.88 c.90.1.1 131430 3brcA 156 29.94 1k07A 263 30.56 d.157.1.1 77218 2p5mA 83 32.05 2e4uA 555 32.65 1qysA 106 32.94 k.41.1.1 96603 1g2qA 187 33.26 c.61.1.1 65117 2rgyA 290 33.49 2bw0A 329 33.59 b.46.1.1,c.65.1.1 129303,129304 1vecA 206 33.81 c.37.1.19 100575 1ne7A 289 33.97 c.124.1.1 91833 1ve2A 235 34.30 c.90.1.1 120008 3crvA 551 34.45 2pl3A 236 35.38 1xi3A 215 37.38 c.1.3.1 109601 2yvqA 143 37.69 1t6nA 220 38.23 c.37.1.19 106576 1b4bA 71 39.90 d.74.2.1 39718 1rvv1 154 40.09 1jk7A 323 40.54 d.159.1.3 63144 1ii7A 333 40.61 d.159.1.4 62415 2fvyA 309 40.94 c.93.1.1 134227 1mdbA 539 41.32 e.23.1.1 79008 1t5hX 504 41.58 e.23.1.1 106449 1q7sA 117 41.58 c.131.1.1 96055 1x8hA 228 42.45 d.157.1.1 114961 2ho4A 259 42.60 1wd5A 208 42.92 c.61.1.1 114524 2ax4A 198 43.27 1ly1A 181 44.29 c.37.1.1 74334 1htwA 158 44.77 c.37.1.18 71083 1b5pA 385 45.85 c.67.1.1 90403 1aw2A 256 46.16 c.1.1.1 28523 1qtwA 285 48.76 c.1.15.1 29392 1zjcA 418 49.59 e.60.1.1 125147 1jb0E 75 50.28 b.34.4.2 62824 2zfzA 79 50.33 1lzlA 323 50.84 c.69.1.2 78306 1q0uA 219 52.60 c.37.1.19 95512 2a22A 215 54.82 d.159.1.7 126025 3bosA 242 55.30 1o4sA 389 55.32 c.67.1.1 86620 1xxaA 78 55.43 d.74.2.1 39700 2bjbA 462 55.87 2h88A 621 55.97 1pvvA 315 56.37 c.78.1.1,c.78.1.1 95190,95191 2okgA 255 58.29 2bkxA 242 58.53 2douA 376 58.66 2gxqA 207 58.76 1uxy 340 59.35 1a3c 181 59.36 2qaiA 111 61.39 1gsa 316 61.44 1ej2A 181 62.23 c.26.1.3 59414 2omdA 154 62.79 1rlkA 117 63.05 c.131.1.1 97651 2ef0A 301 63.59 2dy0A 190 64.22 1gmuA 143 64.36 b.107.1.1,d.58.38.1 65335,65336 1bykA 255 64.77 c.93.1.1 35706 1vp2A 208 64.77 c.51.4.1 113933 1w30A 201 64.96 c.61.1.1 114118 1sfxA 109 65.12 a.4.5.50 105505 3berA 249 65.95 1pg4A 652 66.42 e.23.1.1 88067 2npnA 251 68.11 2igbA 179 70.38 1oaaA 259 72.67 c.2.1.2 29829 2yzkA 178 73.17 2yysA 286 73.63 1qhfA 240 74.39 c.60.1.1 33960 2nxfA 322 75.14 2bsnA 145 75.61 1ro0A 216 75.76 d.264.1.2 97664 2joqA 91 78.46 1heiA 451 78.66 c.37.1.14,c.37.1.14 32463,32464 3b6eA 216 79.24 1g94A 448 79.89 b.71.1.1,c.1.8.1 65169,65170 2hmvA 144 80.17 c.2.1.9 136615 2blnA 305 80.59 b.46.1.1,c.65.1.1 128734,128735 1xviA 275 81.22 c.108.1.10 116088 1cjbA 231 81.36 c.61.1.1 34079 2fqxA 318 81.61 3bijA 285 82.29 2o4cA 380 84.07 2h3gX 268 84.45 1gs5A 258 85.17 c.73.1.2 70395 1dusA 194 86.11 c.66.1.4 34182 2fepA 289 86.69 1hskA 326 89.33 d.145.1.2,d.146.1.1 61241,61242 1zr6A 503 89.37