# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 1.14e-21 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 4.36e-21 2is6A 680 4.96e-21 1w36B 1180 1.94e-17 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 1.60e-14 1w36C 1122 6.46e-14 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 0.02789 1fukA 165 0.05392 c.37.1.19 32409 1t5iA 172 0.07207 c.37.1.19 106450 2jgnA 185 0.7810 1usgA 346 1.846 c.93.1.1 99864 1wviA 257 1.995 c.108.1.14 114915 1oywA 523 2.139 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yksA 440 2.804 c.37.1.14,c.37.1.14 123561,123562 3ch7A 266 3.274 3ckmA 327 3.520 1m3sA 186 3.554 c.80.1.3 78573 1vimA 200 3.578 c.80.1.3 100758 1v25A 541 3.632 e.23.1.1 108275 2j0eA 266 4.312 3cssA 267 4.436 8abp 306 4.547 2v1xA 591 4.557 8abpA 306 4.661 c.93.1.1 35647 2va8A 715 4.912 1tc1A 220 5.544 c.61.1.1 34083 1z15A 344 5.602 1peaA 385 6.161 c.93.1.1 35662 1vjqA 79 6.509 k.43.1.1 100830 1l3iA 192 6.713 c.66.1.22 77676 3borA 237 6.926 1fs5A 266 8.112 c.124.1.1 65044 1vl1A 232 9.828 c.124.1.1 108707 1va0A 239 10.22 c.90.1.1 119899 3brqA 296 10.56 2ioyA 283 11.00 2oxcA 230 11.91 1qdeA 224 11.96 c.37.1.19 32410 1xknA 355 12.64 d.126.1.6 115414 2dxnA 274 12.69 1pea 385 13.62 1e58A 249 13.77 c.60.1.1 59262 3cb6A 444 13.85 2vl7A 540 16.11 1z5zA 271 16.75 c.37.1.19 124499 2bmfA 451 16.75 c.37.1.14,c.37.1.14 128791,128792 2rjoA 332 17.14 1d2mA 665 18.05 c.37.1.19,c.37.1.19 32417,32418 2dri 271 18.14 1jeoA 180 18.47 c.80.1.3 66611 2hcrA 326 18.56 3d02A 303 19.19 2fn9A 290 19.19 2hmaA 376 19.26 2qvcA 313 19.44 2d13A 227 19.45 c.26.2.1 131121 1hgxA 183 19.97 c.61.1.1 34027 2z83A 459 20.40 1w24A 182 20.73 d.159.1.7 120579 2v8oA 444 21.17 2h4aA 325 21.89 1qxyA 252 22.12 d.127.1.1 96565 1y89A 238 23.39 2qbuA 232 23.91 1y0bA 197 24.02 c.61.1.1 122476 2p5mA 83 24.20 2jbhA 225 24.45 1wurA 220 25.25 d.96.1.1 121309 1vecA 206 25.54 c.37.1.19 100575 1jdpA 441 26.42 c.93.1.1 62906 2rgyA 290 26.44 1o57A 291 27.99 a.4.5.40,c.61.1.1 92483,92484 3bblA 287 28.55 2driA 271 28.55 c.93.1.1 35637 1t6nA 220 28.86 c.37.1.19 106576 3bueA 79 29.56 1b4bA 71 29.59 d.74.2.1 39718 1qysA 106 30.45 k.41.1.1 96603 1ve2A 235 31.62 c.90.1.1 120008 2pl3A 236 31.92 1lzlA 323 32.02 c.69.1.2 78306 2ahdA 165 32.74 d.159.1.7 126752 1amuA 563 32.98 e.23.1.1 43351 1q0uA 219 33.74 c.37.1.19 95512 1g2qA 187 33.99 c.61.1.1 65117 3brcA 156 34.04 1ne7A 289 34.24 c.124.1.1 91833 2e4uA 555 34.53 3crvA 551 34.99 2a22A 215 35.37 d.159.1.7 126025 2bkxA 242 35.44 2gukA 120 35.95 2dekA 265 35.98 c.90.1.1 131430 2fvyA 309 37.44 c.93.1.1 134227 1q7sA 117 38.55 c.131.1.1 96055 2yvqA 143 38.81 2bw0A 329 38.83 b.46.1.1,c.65.1.1 129303,129304 1ej2A 181 39.83 c.26.1.3 59414 1gmuA 143 40.93 b.107.1.1,d.58.38.1 65335,65336 1jk7A 323 41.37 d.159.1.3 63144 1ly1A 181 42.29 c.37.1.1 74334 1b5pA 385 43.80 c.67.1.1 90403 3berA 249 44.31 1jb0E 75 45.03 b.34.4.2 62824 1ii7A 333 46.09 d.159.1.4 62415 1bykA 255 47.35 c.93.1.1 35706 1xi3A 215 47.39 c.1.3.1 109601 1sfxA 109 47.58 a.4.5.50 105505 2zfzA 79 48.00 1o4sA 389 48.06 c.67.1.1 86620 2douA 376 48.49 2omdA 154 48.75 2gxqA 207 49.66 2ax4A 198 50.76 1rlkA 117 51.56 c.131.1.1 97651 1wd5A 208 51.81 c.61.1.1 114524 2qaiA 111 53.34 1mdbA 539 53.36 e.23.1.1 79008 1k07A 263 53.55 d.157.1.1 77218 1w30A 201 55.23 c.61.1.1 114118 1htwA 158 55.47 c.37.1.18 71083 1rvv1 154 57.06 2nxfA 322 59.10 2h88A 621 60.08 1aw2A 256 60.09 c.1.1.1 28523 1zjcA 418 60.24 e.60.1.1 125147 2npnA 251 61.30 1gsa 316 61.72 1pvvA 315 61.72 c.78.1.1,c.78.1.1 95190,95191 1a3c 181 64.11 2ho4A 259 64.16 2yvtA 260 64.59 3bosA 242 64.77 2ef0A 301 65.06 1oaaA 259 65.40 c.2.1.2 29829 1xxaA 78 65.44 d.74.2.1 39700 1t5hX 504 66.05 e.23.1.1 106449 3bijA 285 67.12 1x8hA 228 67.20 d.157.1.1 114961 2fepA 289 67.73 1pj5A 830 67.93 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2dy0A 190 70.50 1bw0A 416 72.87 c.67.1.1 34385 2fqxA 318 73.53 1jvnA 555 75.05 c.1.2.1,c.23.16.1 67355,67356 1v8dA 235 75.23 c.140.1.1 108425 1uxy 340 75.85 2igbA 179 76.61 1vp2A 208 76.72 c.51.4.1 113933 1dusA 194 78.08 c.66.1.4 34182 1qhfA 240 78.31 c.60.1.1 33960 1ls6A 295 78.37 c.37.1.5 91115 1dbqA 289 79.84 c.93.1.1 35666 2ywuA 181 80.11 1qtwA 285 80.60 c.1.15.1 29392 2nzcA 86 81.49 1c4oA 664 81.68 c.37.1.19,c.37.1.19 32415,32416 2c2xA 281 82.00 1jyeA 349 83.57 c.93.1.1 67455 2bjbA 462 84.33 3brsA 289 84.78 3b6eA 216 84.79 2yysA 286 85.17 1y8cA 246 86.35 c.66.1.43 116563 2okgA 255 86.38 1cjbA 231 86.79 c.61.1.1 34079 2h3gX 268 87.36 2blnA 305 87.48 b.46.1.1,c.65.1.1 128734,128735 1ro0A 216 89.38 d.264.1.2 97664 1z2wA 192 89.74 d.159.1.7 124390