# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 7.31e-20 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 1.32e-19 1pjr 724 5.40e-19 1w36B 1180 3.89e-15 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 2.95e-13 1w36C 1122 5.53e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1fukA 165 0.05380 c.37.1.19 32409 1t5iA 172 0.1153 c.37.1.19 106450 2hjvA 163 0.3234 1oywA 523 0.3861 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2v1xA 591 0.4948 3ch7A 266 0.8434 3cssA 267 1.091 1va0A 239 2.450 c.90.1.1 119899 1usgA 346 2.524 c.93.1.1 99864 2jgnA 185 2.534 1tc1A 220 3.343 c.61.1.1 34083 2dxnA 274 3.459 8abp 306 3.850 2j0eA 266 3.934 1z15A 344 5.023 8abpA 306 6.605 c.93.1.1 35647 1y89A 238 6.656 1fs5A 266 6.662 c.124.1.1 65044 2bkxA 242 7.185 1z7lA 276 7.297 1yksA 440 7.685 c.37.1.14,c.37.1.14 123561,123562 1dm5A 315 7.688 a.65.1.1 18186 3cb6A 444 8.139 1ly1A 181 8.542 c.37.1.1 74334 2qbuA 232 8.633 1w24A 182 10.72 d.159.1.7 120579 1ne7A 289 12.35 c.124.1.1 91833 1vimA 200 12.50 c.80.1.3 100758 1vjqA 79 12.81 k.43.1.1 100830 1jeoA 180 13.75 c.80.1.3 66611 1hm6A 346 13.96 a.65.1.1 18147 2ie7A 318 13.96 a.65.1.1 137293 1w3wA 327 14.67 1n00A 321 14.85 a.65.1.1 85241 2v8oA 444 14.92 1fo8A 343 15.58 c.68.1.10 59927 1axn 323 15.70 1cbfA 285 16.22 c.90.1.1 35587 1rlkA 117 16.98 c.131.1.1 97651 1c4oA 664 17.51 c.37.1.19,c.37.1.19 32415,32416 2hyvA 308 17.52 1yiiA 320 17.93 2jbhA 225 18.12 1m3sA 186 18.32 c.80.1.3 78573 2rjoA 332 18.63 1z5zA 271 18.81 c.37.1.19 124499 2ri0A 234 19.27 1peaA 385 19.29 c.93.1.1 35662 1i0lA 221 19.37 c.61.1.1 71096 2hszA 243 19.58 c.108.1.6 136726 1vp8A 201 19.95 c.49.1.2 113947 1b4bA 71 20.20 d.74.2.1 39718 1ka9H 200 21.70 c.23.16.1 77308 1q7sA 117 21.74 c.131.1.1 96055 1vl1A 232 21.99 c.124.1.1 108707 2gukA 120 22.04 2dt8A 280 22.14 2z83A 459 23.00 1pea 385 23.49 3bueA 79 23.77 2zfzA 79 24.06 1qxyA 252 24.59 d.127.1.1 96565 2p5mA 83 25.07 1ve2A 235 25.88 c.90.1.1 120008 3brqA 296 26.17 1in0A 163 26.48 d.58.49.1,d.58.49.1 83694,83695 1y0bA 197 26.74 c.61.1.1 122476 2eq5A 228 27.26 1z2wA 192 27.84 d.159.1.7 124390 1xknA 355 31.83 d.126.1.6 115414 1w7bA 339 33.21 a.65.1.1 114317 1i4aA 318 33.26 a.65.1.1 61681 1qdlB 195 34.00 c.23.16.1 31437 1gs5A 258 35.39 c.73.1.2 70395 2om6A 235 35.76 1xxaA 78 35.87 d.74.2.1 39700 1g2qA 187 37.32 c.61.1.1 65117 1axnA 323 37.43 a.65.1.1 18149 3d02A 303 37.75 1hgxA 183 39.80 c.61.1.1 34027 1g60A 260 39.98 c.66.1.11 70151 1urrA 102 40.25 d.58.10.1 107998 1gvnB 287 40.80 c.37.1.21 76354 2a22A 215 41.38 d.159.1.7 126025 2fvyA 309 42.40 c.93.1.1 134227 2vl7A 540 44.23 2fepA 289 44.58 1j7jA 178 44.59 c.61.1.1 84131 1s2oA 244 45.19 c.108.1.10 118846 2h3gX 268 45.51 1cjbA 231 45.90 c.61.1.1 34079 1e58A 249 47.01 c.60.1.1 59262 2dri 271 49.39 3cs3A 277 49.84 1heiA 451 50.85 c.37.1.14,c.37.1.14 32463,32464 1aw2A 256 51.76 c.1.1.1 28523 1wn2A 121 51.81 1xtyA 120 51.86 1l3iA 192 52.03 c.66.1.22 77676 1rz3A 201 52.11 c.37.1.6 98132 2eklA 313 52.51 3brcA 156 52.65 1ls1A 295 52.69 a.24.13.1,c.37.1.10 78170,78171 2pjmA 226 52.93 1k07A 263 53.02 d.157.1.1 77218 1iu8A 206 53.09 c.56.4.1 71436 2c2xA 281 53.61 3ckmA 327 53.80 2e0nA 259 54.46 2va1A 256 54.57 1zjcA 418 54.65 e.60.1.1 125147 1d2mA 665 56.61 c.37.1.19,c.37.1.19 32417,32418 2fqxA 318 57.42 2e4uA 555 57.83 1uc8A 280 59.34 c.30.1.6,d.142.1.7 99165,99166 2g8lA 299 61.13 e.50.1.1 134775 1rwhA 757 61.33 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2fg1A 158 61.46 c.50.1.2 133400 3breA 358 62.92 2va8A 715 64.04 2driA 271 65.03 c.93.1.1 35637 1zn8A 180 66.01 c.61.1.1 125376 1o0xA 262 66.41 d.127.1.1 80755 2jfrA 234 66.60 2hhjA 267 67.04 c.60.1.1 136497 2g7zA 282 67.70 1r45A 204 68.28 d.166.1.1 111683 1y2qA 143 68.75 2igbA 179 70.38 1wdvA 152 70.61 d.116.1.1 114539 1vjfA 180 70.71 d.116.1.1 100809 2ifuA 307 70.95 2bmfA 451 71.18 c.37.1.14,c.37.1.14 128791,128792 1bykA 255 71.70 c.93.1.1 35706 1fyeA 229 73.99 c.23.16.4 31477 1xvwA 160 74.30 c.47.1.10 122387 2rgyA 290 75.00 2e18A 257 76.17 2joqA 91 76.39 1y8cA 246 77.34 c.66.1.43 116563 2bneA 241 78.57 c.73.1.3 128824 2ehzA 302 78.73 2ywjA 186 78.92 3co4A 312 79.46 2pi1A 334 79.52 1qhfA 240 79.61 c.60.1.1 33960 2odtX 328 81.99 2d74B 148 82.03 1a4iA 301 82.28 c.2.1.7,c.58.1.2 30278,33926 2j82A 240 82.49 1xi3A 215 84.20 c.1.3.1 109601 2qvcA 313 84.49 1pe1A 267 86.05 c.1.10.4 94591 1u3dA 509 86.17 a.99.1.1,c.28.1.1 107638,107639 1gca 309 86.46 1x12A 208 86.68 1te2A 226 87.12 c.108.1.6 106792 1auaA 296 88.74 a.5.3.1,c.13.1.1 16290,30882