# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 2.92e-20 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 1.26e-19 1pjr 724 1.59e-19 1w36B 1180 2.29e-16 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 2.42e-13 1w36C 1122 7.19e-13 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1fukA 165 0.1166 c.37.1.19 32409 2hjvA 163 0.1409 1t5iA 172 0.1424 c.37.1.19 106450 1oywA 523 0.7410 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2jgnA 185 0.8852 1v25A 541 1.501 e.23.1.1 108275 1usgA 346 1.887 c.93.1.1 99864 2v1xA 591 1.951 3ch7A 266 2.761 3ckmA 327 2.965 3cssA 267 3.268 1wviA 257 3.843 c.108.1.14 114915 1yksA 440 4.080 c.37.1.14,c.37.1.14 123561,123562 1vimA 200 4.535 c.80.1.3 100758 1z15A 344 4.689 1vjqA 79 5.199 k.43.1.1 100830 1peaA 385 6.120 c.93.1.1 35662 2dxnA 274 9.423 8abp 306 9.514 2j0eA 266 10.14 2npnA 251 10.46 2v8oA 444 10.69 1m3sA 186 10.72 c.80.1.3 78573 3cb6A 444 10.88 1e58A 249 11.21 c.60.1.1 59262 3borA 237 11.29 1tc1A 220 12.08 c.61.1.1 34083 2va8A 715 12.34 2d13A 227 13.05 c.26.2.1 131121 1pea 385 14.13 2hmaA 376 15.10 1pj5A 830 15.44 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2a22A 215 16.08 d.159.1.7 126025 1amuA 563 17.92 e.23.1.1 43351 1z5zA 271 17.95 c.37.1.19 124499 1fs5A 266 18.00 c.124.1.1 65044 8abpA 306 18.34 c.93.1.1 35647 2h4aA 325 18.65 1qxyA 252 21.42 d.127.1.1 96565 1va0A 239 22.26 c.90.1.1 119899 1jeoA 180 22.46 c.80.1.3 66611 2hcrA 326 23.94 1w24A 182 24.31 d.159.1.7 120579 2g1uA 155 25.00 1ve2A 235 25.04 c.90.1.1 120008 1ne7A 289 27.37 c.124.1.1 91833 1o57A 291 27.52 a.4.5.40,c.61.1.1 92483,92484 2e4uA 555 28.70 2oxcA 230 29.16 2vl7A 540 30.72 1xknA 355 32.74 d.126.1.6 115414 1uxy 340 32.75 2qvcA 313 33.47 2ioyA 283 33.48 2bmfA 451 34.30 c.37.1.14,c.37.1.14 128791,128792 1luaA 287 34.42 c.2.1.7,c.58.1.4 78216,78217 1jdpA 441 34.57 c.93.1.1 62906 2z83A 459 35.35 1g94A 448 36.14 b.71.1.1,c.1.8.1 65169,65170 2dri 271 36.38 2bsnA 145 36.97 3d02A 303 38.11 2rjoA 332 38.62 1z2wA 192 38.79 d.159.1.7 124390 2yvqA 143 39.48 1q0uA 219 41.38 c.37.1.19 95512 2p5mA 83 41.91 1t5hX 504 42.53 e.23.1.1 106449 2gxqA 207 43.82 2bjbA 462 44.18 1htwA 158 44.25 c.37.1.18 71083 2fvyA 309 45.04 c.93.1.1 134227 2yvtA 260 46.08 1sfxA 109 46.19 a.4.5.50 105505 1uxyA 340 46.26 d.145.1.2,d.146.1.1 41748,41761 1jb0E 75 46.57 b.34.4.2 62824 1gsa 316 48.63 1d2mA 665 49.15 c.37.1.19,c.37.1.19 32417,32418 1wurA 220 50.49 d.96.1.1 121309 3bueA 79 50.60 1qdeA 224 50.66 c.37.1.19 32410 1gmuA 143 50.92 b.107.1.1,d.58.38.1 65335,65336 1ro0A 216 50.93 d.264.1.2 97664 1qhfA 240 51.23 c.60.1.1 33960 1b4bA 71 52.41 d.74.2.1 39718 2ahdA 165 52.66 d.159.1.7 126752 2nzcA 86 54.44 1k07A 263 56.07 d.157.1.1 77218 2pi1A 334 56.34 1xi3A 215 57.30 c.1.3.1 109601 3berA 249 57.60 1gudA 288 58.10 c.93.1.1 83326 1hgxA 183 58.10 c.61.1.1 34027 1t6nA 220 59.71 c.37.1.19 106576 1ej2A 181 59.95 c.26.1.3 59414 1jk7A 323 60.89 d.159.1.3 63144 2db3A 434 61.01 2gukA 120 62.24 2yvwA 425 63.74 2e18A 257 63.84 1riiA 265 65.14 c.60.1.1 111807 2z0mA 337 65.66 1gs5A 258 66.12 c.73.1.2 70395 2hmvA 144 66.80 c.2.1.9 136615 2driA 271 67.68 c.93.1.1 35637 2pl3A 236 67.68 1zjcA 418 68.15 e.60.1.1 125147 2qbuA 232 68.75 3bh1A 507 69.64 3brcA 156 70.50 2h88A 621 71.44 2bw0A 329 74.49 b.46.1.1,c.65.1.1 129303,129304 1ro2A 216 74.95 d.264.1.2 97665 2zfzA 79 75.57 2jbhA 225 77.44 2v7bA 529 77.63 1y89A 238 78.04 1hx0A 496 79.69 b.71.1.1,c.1.8.1 61346,61347 1vp8A 201 79.88 c.49.1.2 113947 2ef0A 301 80.23 1hskA 326 81.79 d.145.1.2,d.146.1.1 61241,61242 2qjtA 352 83.07 2napA 723 83.12 b.52.2.2,c.81.1.1 26926,35334 1pvvA 315 84.79 c.78.1.1,c.78.1.1 95190,95191 5eauA 548 85.51 a.102.4.1,a.128.1.3 18851,19443 1ka9H 200 85.73 c.23.16.1 77308 1e0cA 271 86.97 c.46.1.2,c.46.1.2 32717,32718 2jigA 224 87.30 1rkqA 282 88.00 c.108.1.10 97621 1y8cA 246 88.63 c.66.1.43 116563 2fi1A 190 88.65 c.108.1.3 133508 1hf2A 210 89.05 b.80.3.1,c.102.1.1 60992,60993 1rvv1 154 89.17 2o4cA 380 89.62