# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 3.14e-17 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 7.71e-17 2is6A 680 6.29e-16 1w36B 1180 8.52e-14 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 1.34e-10 1w36C 1122 4.19e-10 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 1.254 1t5iA 172 2.211 c.37.1.19 106450 1fukA 165 2.485 c.37.1.19 32409 1usgA 346 3.580 c.93.1.1 99864 2nx9A 464 5.040 1z15A 344 6.011 2jgnA 185 6.341 2napA 723 6.574 b.52.2.2,c.81.1.1 26926,35334 3cb6A 444 6.878 2okcA 445 7.541 1pj5A 830 9.602 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2r85A 334 10.95 1oywA 523 11.21 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1v25A 541 13.38 e.23.1.1 108275 1k07A 263 14.78 d.157.1.1 77218 2gmnA 274 15.32 1o4sA 389 16.01 c.67.1.1 86620 1u3dA 509 17.52 a.99.1.1,c.28.1.1 107638,107639 1m3sA 186 17.84 c.80.1.3 78573 1qxyA 252 18.79 d.127.1.1 96565 2yvdA 431 19.46 1jk7A 323 19.68 d.159.1.3 63144 2a9gA 418 19.69 d.126.1.4 126435 2ahdA 165 22.70 d.159.1.7 126752 3ch7A 266 24.42 1sznA 417 25.78 b.71.1.1,c.1.8.1 106162,106163 2h5gA 463 28.46 2p8bA 369 28.88 1heiA 451 29.74 c.37.1.14,c.37.1.14 32463,32464 1tf5A 844 30.19 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2qcvA 332 30.78 1g38A 393 31.94 c.66.1.27,d.287.1.1 111567,111568 1vimA 200 32.48 c.80.1.3 100758 1aw2A 256 32.92 c.1.1.1 28523 1kl7A 514 33.79 c.79.1.1 72678 1gteA 1025 35.74 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2fn9A 290 35.79 1nf2A 268 36.98 c.108.1.10 91849 1zfjA 491 37.05 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1mo9A 523 37.15 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1qhtA 775 37.37 c.55.3.5,e.8.1.1 33722,43011 1wkyA 464 38.10 b.18.1.31,c.1.8.3 120992,120993 1vjqA 79 40.40 k.43.1.1 100830 2goyA 275 40.65 1tkiA 321 40.95 d.144.1.7 41638 1izcA 339 41.53 c.1.12.5 83838 1yksA 440 42.81 c.37.1.14,c.37.1.14 123561,123562 1a0cA 438 43.34 c.1.15.3 29529 1iowA 306 46.38 c.30.1.2,d.142.1.1 31713,41481 3cssA 267 46.89 8abpA 306 47.84 c.93.1.1 35647 1amuA 563 48.68 e.23.1.1 43351 2ap1A 327 49.59 c.55.1.10,c.55.1.10 127108,127109 1vg0A 650 52.79 c.3.1.3,d.16.1.6 108596,108597 1qwkA 317 53.99 c.1.7.1 96482 1uxyA 340 54.09 d.145.1.2,d.146.1.1 41748,41761 1cbfA 285 56.07 c.90.1.1 35587 3bh1A 507 56.53 2npnA 251 57.86 1tc1A 220 58.13 c.61.1.1 34083 1v73A 342 60.50 2a22A 215 61.09 d.159.1.7 126025 2v6oA 596 61.51 2rebA 352 62.01 c.37.1.11,d.48.1.1 32282,38767 2h1yA 321 62.62 2vhxA 377 62.79 2yrxA 451 62.99 1z5zA 271 63.44 c.37.1.19 124499 2ozpA 345 63.82 2d13A 227 64.03 c.26.2.1 131121 1e9rA 437 64.84 c.37.1.11 64827 1gl6A 436 65.22 c.37.1.11 70259 2qn6A 414 65.42 1hdiA 413 65.44 c.86.1.1 60964 1rqbA 539 66.34 a.5.7.2,c.1.10.5 105057,105058 2hmaA 376 67.72 1hskA 326 68.05 d.145.1.2,d.146.1.1 61241,61242 3ckmA 327 68.34 2uy1A 493 68.61 2dh2A 424 68.71 1pvdA 537 68.94 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2mbrA 340 69.03 d.145.1.2,d.146.1.1 41749,41762 2eu9A 355 69.16 1s1pA 331 70.13 c.1.7.1 98350 2v1xA 591 70.94 1js3A 486 71.00 c.67.1.6 67215 2hy1A 280 71.24 1np7A 489 73.18 a.99.1.1,c.28.1.1 80677,80678 3cpgA 282 74.34 1n7vA 555 74.40 b.126.1.1 85377 1qwoA 442 77.18 c.60.1.2 104620 1ox0A 430 77.50 c.95.1.1,c.95.1.1 87495,87496 1uxy 340 77.51 2yvwA 425 78.16 2v3vA 723 78.72 2p0oA 372 80.49 1ji6A 589 81.02 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1o0xA 262 82.10 d.127.1.1 80755 2nxfA 322 82.58 2om6A 235 83.80 1pn0A 665 85.11 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2cb0A 333 86.25