# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 6.49e-20 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 2.48e-19 1pjr 724 4.04e-19 1w36B 1180 3.46e-16 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 2.61e-13 1w36C 1122 5.80e-13 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1fukA 165 0.1315 c.37.1.19 32409 2hjvA 163 0.1522 1t5iA 172 0.1629 c.37.1.19 106450 1oywA 523 0.9291 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2jgnA 185 1.218 3ckmA 327 2.271 1v25A 541 2.321 e.23.1.1 108275 1usgA 346 2.532 c.93.1.1 99864 1wviA 257 3.044 c.108.1.14 114915 2v1xA 591 3.058 1yksA 440 4.336 c.37.1.14,c.37.1.14 123561,123562 3ch7A 266 4.509 3cssA 267 4.622 1vimA 200 6.578 c.80.1.3 100758 1z15A 344 6.703 1peaA 385 7.115 c.93.1.1 35662 1vjqA 79 8.258 k.43.1.1 100830 2npnA 251 8.794 2dxnA 274 9.017 1tc1A 220 9.188 c.61.1.1 34083 8abp 306 9.679 2v8oA 444 9.899 3borA 237 10.34 1z5zA 271 10.52 c.37.1.19 124499 1m3sA 186 11.87 c.80.1.3 78573 3cb6A 444 12.34 2a22A 215 12.60 d.159.1.7 126025 1e58A 249 12.92 c.60.1.1 59262 2j0eA 266 12.93 2h4aA 325 13.10 2va8A 715 13.40 1pea 385 15.16 2d13A 227 15.61 c.26.2.1 131121 8abpA 306 16.14 c.93.1.1 35647 1va0A 239 18.27 c.90.1.1 119899 2oxcA 230 19.86 1amuA 563 20.35 e.23.1.1 43351 1fs5A 266 20.35 c.124.1.1 65044 1pj5A 830 20.44 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2hcrA 326 21.27 1xknA 355 22.05 d.126.1.6 115414 1w24A 182 22.38 d.159.1.7 120579 1jeoA 180 23.80 c.80.1.3 66611 1ve2A 235 25.00 c.90.1.1 120008 2hmaA 376 25.38 1ne7A 289 25.61 c.124.1.1 91833 1o57A 291 27.37 a.4.5.40,c.61.1.1 92483,92484 2g1uA 155 28.42 2e4uA 555 28.47 1qxyA 252 29.17 d.127.1.1 96565 2qvcA 313 30.27 1uxy 340 30.93 1q0uA 219 32.58 c.37.1.19 95512 2z83A 459 33.56 1jdpA 441 35.13 c.93.1.1 62906 2dri 271 35.98 2ahdA 165 36.12 d.159.1.7 126752 2gxqA 207 36.71 1qdeA 224 38.45 c.37.1.19 32410 2vl7A 540 38.50 1z2wA 192 38.87 d.159.1.7 124390 1luaA 287 39.39 c.2.1.7,c.58.1.4 78216,78217 2ioyA 283 40.09 3d02A 303 40.50 2yvtA 260 40.56 2yvqA 143 41.01 1uxyA 340 42.35 d.145.1.2,d.146.1.1 41748,41761 2pi1A 334 42.70 1d2mA 665 43.52 c.37.1.19,c.37.1.19 32417,32418 2rjoA 332 44.46 1jk7A 323 45.15 d.159.1.3 63144 2p5mA 83 46.39 1hgxA 183 47.07 c.61.1.1 34027 2bmfA 451 47.14 c.37.1.14,c.37.1.14 128791,128792 2z0mA 337 47.43 1htwA 158 49.99 c.37.1.18 71083 1xi3A 215 50.56 c.1.3.1 109601 1t6nA 220 50.82 c.37.1.19 106576 2db3A 434 50.86 1gmuA 143 53.72 b.107.1.1,d.58.38.1 65335,65336 2pl3A 236 56.36 1gsa 316 56.64 1wurA 220 57.20 d.96.1.1 121309 2bsnA 145 57.56 1b4bA 71 58.65 d.74.2.1 39718 1vecA 206 58.90 c.37.1.19 100575 3brcA 156 58.95 1jb0E 75 59.89 b.34.4.2 62824 3bueA 79 60.44 3berA 249 62.38 2fqxA 318 63.02 2qbuA 232 63.24 2fvyA 309 64.17 c.93.1.1 134227 1zjcA 418 64.55 e.60.1.1 125147 1gudA 288 65.00 c.93.1.1 83326 2jbhA 225 66.22 1qhfA 240 66.45 c.60.1.1 33960 1t5hX 504 66.84 e.23.1.1 106449 3bh1A 507 67.57 2ef0A 301 67.98 2driA 271 68.08 c.93.1.1 35637 1gs5A 258 68.37 c.73.1.2 70395 1pvvA 315 69.57 c.78.1.1,c.78.1.1 95190,95191 2gukA 120 69.92 1ro0A 216 70.51 d.264.1.2 97664 2bjbA 462 72.55 1y8cA 246 72.86 c.66.1.43 116563 2yvwA 425 73.62 1k07A 263 73.81 d.157.1.1 77218 1y89A 238 73.97 1vl1A 232 75.51 c.124.1.1 108707 1g94A 448 76.15 b.71.1.1,c.1.8.1 65169,65170 2e18A 257 76.62 2h88A 621 77.90 2hmvA 144 78.55 c.2.1.9 136615 1hskA 326 79.85 d.145.1.2,d.146.1.1 61241,61242 1ej2A 181 80.95 c.26.1.3 59414 1cjbA 231 81.44 c.61.1.1 34079 2ho4A 259 82.01 1q7sA 117 82.43 c.131.1.1 96055 1bykA 255 83.27 c.93.1.1 35706 2napA 723 83.74 b.52.2.2,c.81.1.1 26926,35334 2qjtA 352 85.04 1vp8A 201 85.47 c.49.1.2 113947 2mbrA 340 86.29 d.145.1.2,d.146.1.1 41749,41762