# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 3.91e-23 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 3.41e-22 1pjr 724 4.66e-22 1w36B 1180 1.27e-18 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 2.17e-15 1w36C 1122 7.40e-15 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1fukA 165 0.07341 c.37.1.19 32409 2hjvA 163 0.1200 1t5iA 172 0.1272 c.37.1.19 106450 1v25A 541 0.9848 e.23.1.1 108275 1oywA 523 1.027 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2jgnA 185 1.184 3ckmA 327 2.171 1peaA 385 2.288 c.93.1.1 35662 1wviA 257 2.476 c.108.1.14 114915 1yksA 440 2.549 c.37.1.14,c.37.1.14 123561,123562 1usgA 346 2.840 c.93.1.1 99864 2v1xA 591 3.597 1pea 385 4.675 1z15A 344 7.212 3ch7A 266 7.332 3cb6A 444 7.345 2v8oA 444 8.617 3cssA 267 9.794 2dxnA 274 12.66 1vjqA 79 12.80 k.43.1.1 100830 2h4aA 325 13.13 2d13A 227 13.29 c.26.2.1 131121 1tc1A 220 15.01 c.61.1.1 34083 2e4uA 555 15.60 2va8A 715 17.49 8abp 306 19.58 3borA 237 20.03 1z5zA 271 20.62 c.37.1.19 124499 1w24A 182 21.10 d.159.1.7 120579 1jk7A 323 21.50 d.159.1.3 63144 2fqxA 318 25.12 2hmaA 376 25.23 1ne7A 289 25.28 c.124.1.1 91833 1fs5A 266 25.46 c.124.1.1 65044 1dbqA 289 25.73 c.93.1.1 35666 2bmfA 451 27.21 c.37.1.14,c.37.1.14 128791,128792 1jb0E 75 27.51 b.34.4.2 62824 1vimA 200 27.85 c.80.1.3 100758 2ahdA 165 28.09 d.159.1.7 126752 2npnA 251 28.31 1m3sA 186 28.75 c.80.1.3 78573 2vl7A 540 29.16 1jdpA 441 30.21 c.93.1.1 62906 2j0eA 266 30.34 2jbhA 225 30.70 1qxyA 252 33.21 d.127.1.1 96565 2z83A 459 33.26 2a22A 215 34.34 d.159.1.7 126025 1e58A 249 35.32 c.60.1.1 59262 2dekA 265 36.24 c.90.1.1 131430 2qvcA 313 38.35 1hgxA 183 38.99 c.61.1.1 34027 1xknA 355 39.17 d.126.1.6 115414 1rkqA 282 40.57 c.108.1.10 97621 1pj5A 830 40.76 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2oxcA 230 41.00 8abpA 306 41.45 c.93.1.1 35647 1k07A 263 44.86 d.157.1.1 77218 2ioyA 283 44.91 1amuA 563 45.79 e.23.1.1 43351 1uteA 313 46.51 d.159.1.1 42078 1t6nA 220 47.58 c.37.1.19 106576 1zjcA 418 47.72 e.60.1.1 125147 2dri 271 48.04 2gxqA 207 48.58 1vl1A 232 49.96 c.124.1.1 108707 1g94A 448 51.04 b.71.1.1,c.1.8.1 65169,65170 1q0uA 219 51.16 c.37.1.19 95512 1o57A 291 51.79 a.4.5.40,c.61.1.1 92483,92484 2rgyA 290 51.87 1vecA 206 52.25 c.37.1.19 100575 2ev1A 222 52.77 1suwA 249 53.32 e.52.1.1 106027 2rjoA 332 54.96 2r85A 334 56.55 2ywuA 181 57.61 2h88A 621 58.33 2fvyA 309 58.95 c.93.1.1 134227 3brqA 296 59.21 1ir6A 424 59.54 c.107.1.2 71342 1vp2A 208 59.63 c.51.4.1 113933 2joqA 91 59.81 3d02A 303 60.68 2yvwA 425 60.80 1heiA 451 60.90 c.37.1.14,c.37.1.14 32463,32464 1wurA 220 64.63 d.96.1.1 121309 1dm5A 315 66.88 a.65.1.1 18186 2qjtA 352 68.47 1uxy 340 68.90 2ho4A 259 69.59 1rvv1 154 69.86 1ve2A 235 70.11 c.90.1.1 120008 2d1sA 548 71.80 1vp8A 201 74.12 c.49.1.2 113947 2aioA 269 74.48 d.157.1.1 126829 1d2mA 665 74.90 c.37.1.19,c.37.1.19 32417,32418 1ii7A 333 75.15 d.159.1.4 62415 1fmjA 351 76.00 c.37.1.5 59879 1sfxA 109 76.25 a.4.5.50 105505 2g1uA 155 76.91 1aw2A 256 77.05 c.1.1.1 28523 2pl3A 236 77.38 2gukA 120 78.21 3bblA 287 79.72 3berA 249 81.72 1qdeA 224 82.48 c.37.1.19 32410 1xxaA 78 82.73 d.74.2.1 39700 1olmA 403 83.74 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1sw2A 275 84.09 c.94.1.1 106064 2yvqA 143 85.30 2napA 723 85.34 b.52.2.2,c.81.1.1 26926,35334 2yvtA 260 85.53 3bh1A 507 86.46 2blnA 305 86.65 b.46.1.1,c.65.1.1 128734,128735 1gudA 288 87.96 c.93.1.1 83326 1jeoA 180 88.63 c.80.1.3 66611 1jyeA 349 88.83 c.93.1.1 67455 1qhtA 775 89.14 c.55.3.5,e.8.1.1 33722,43011 1ej2A 181 89.59 c.26.1.3 59414