# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 6.39e-22 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 3.73e-21 1pjr 724 4.71e-21 1w36B 1180 2.54e-17 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 7.31e-15 1w36C 1122 1.03e-13 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 0.05338 1fukA 165 0.1114 c.37.1.19 32409 1t5iA 172 0.1257 c.37.1.19 106450 1oywA 523 1.117 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wviA 257 1.404 c.108.1.14 114915 2jgnA 185 1.449 1v25A 541 1.722 e.23.1.1 108275 2v1xA 591 2.240 1yksA 440 3.158 c.37.1.14,c.37.1.14 123561,123562 2v8oA 444 4.253 1usgA 346 4.514 c.93.1.1 99864 1peaA 385 4.549 c.93.1.1 35662 1m3sA 186 4.806 c.80.1.3 78573 3ch7A 266 5.042 1vimA 200 5.331 c.80.1.3 100758 3ckmA 327 5.706 3cb6A 444 6.250 3cssA 267 7.056 2bmfA 451 7.079 c.37.1.14,c.37.1.14 128791,128792 1tc1A 220 7.884 c.61.1.1 34083 1z15A 344 8.742 1vjqA 79 8.989 k.43.1.1 100830 8abp 306 9.548 2j0eA 266 9.858 2dekA 265 10.75 c.90.1.1 131430 2dxnA 274 11.07 2va8A 715 11.22 1pea 385 11.64 2d13A 227 11.69 c.26.2.1 131121 3borA 237 11.87 1fs5A 266 12.74 c.124.1.1 65044 2vl7A 540 14.16 8abpA 306 14.39 c.93.1.1 35647 1e58A 249 14.43 c.60.1.1 59262 2ioyA 283 15.03 1amuA 563 19.77 e.23.1.1 43351 1ne7A 289 19.85 c.124.1.1 91833 2z83A 459 20.30 2a22A 215 20.57 d.159.1.7 126025 2dri 271 21.98 1o57A 291 22.63 a.4.5.40,c.61.1.1 92483,92484 3d02A 303 23.03 1jeoA 180 23.10 c.80.1.3 66611 3bblA 287 23.64 1vl1A 232 23.79 c.124.1.1 108707 1uxy 340 23.98 2gxqA 207 25.09 1z5zA 271 25.22 c.37.1.19 124499 2fqxA 318 25.73 2qvcA 313 25.82 1uteA 313 27.26 d.159.1.1 42078 2pl3A 236 27.55 1q0uA 219 27.79 c.37.1.19 95512 2gukA 120 28.41 2h4aA 325 28.50 1xknA 355 29.23 d.126.1.6 115414 2yvtA 260 29.64 1jk7A 323 30.12 d.159.1.3 63144 1gudA 288 30.97 c.93.1.1 83326 2ev1A 222 31.48 1vecA 206 31.72 c.37.1.19 100575 1jdpA 441 32.23 c.93.1.1 62906 1g94A 448 33.38 b.71.1.1,c.1.8.1 65169,65170 2hmaA 376 33.48 3brqA 296 34.37 1rkqA 282 34.42 c.108.1.10 97621 1uxyA 340 34.96 d.145.1.2,d.146.1.1 41748,41761 1qxyA 252 35.10 d.127.1.1 96565 2rjoA 332 35.43 2h88A 621 36.28 1ve2A 235 36.45 c.90.1.1 120008 2hcrA 326 36.73 2npnA 251 36.93 2mbrA 340 37.00 d.145.1.2,d.146.1.1 41749,41762 1ii7A 333 37.87 d.159.1.4 62415 1wurA 220 39.83 d.96.1.1 121309 1xi3A 215 39.96 c.1.3.1 109601 2e4uA 555 40.01 1t6nA 220 40.64 c.37.1.19 106576 2ahdA 165 41.07 d.159.1.7 126752 2rgyA 290 41.48 2pi1A 334 41.69 2g1uA 155 42.19 1y0bA 197 42.98 c.61.1.1 122476 2fn9A 290 43.15 2yvqA 143 43.17 3berA 249 43.30 1va0A 239 45.11 c.90.1.1 119899 1d2mA 665 45.38 c.37.1.19,c.37.1.19 32417,32418 1w24A 182 45.65 d.159.1.7 120579 2fvyA 309 47.89 c.93.1.1 134227 2o4cA 380 48.03 2bw0A 329 49.13 b.46.1.1,c.65.1.1 129303,129304 1rvv1 154 49.16 2oxcA 230 49.25 1heiA 451 49.63 c.37.1.14,c.37.1.14 32463,32464 1zjcA 418 49.99 e.60.1.1 125147 2jbhA 225 50.00 2driA 271 50.85 c.93.1.1 35637 1pj5A 830 51.45 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1lzlA 323 52.32 c.69.1.2 78306 1jb0E 75 52.80 b.34.4.2 62824 1xviA 275 53.75 c.108.1.10 116088 1hx0A 496 55.11 b.71.1.1,c.1.8.1 61346,61347 3brsA 289 55.36 1sfxA 109 55.38 a.4.5.50 105505 1ej2A 181 56.93 c.26.1.3 59414 1jyeA 349 57.36 c.93.1.1 67455 1hskA 326 58.21 d.145.1.2,d.146.1.1 61241,61242 3bueA 79 58.28 1dbqA 289 59.31 c.93.1.1 35666 2nxfA 322 59.52 1qdeA 224 59.59 c.37.1.19 32410 2p5mA 83 60.19 1iyeA 309 60.35 e.17.1.1 83786 1hgxA 183 61.00 c.61.1.1 34027 2hy1A 280 61.22 2bjbA 462 61.98 1k07A 263 62.45 d.157.1.1 77218 1gsa 316 63.01 1s8eA 333 64.07 d.159.1.4 105368 1t5hX 504 66.04 e.23.1.1 106449 2yvwA 425 66.43 1l3iA 192 70.02 c.66.1.22 77676 1y89A 238 70.38 2blnA 305 71.50 b.46.1.1,c.65.1.1 128734,128735 2ho4A 259 72.92 1xxaA 78 74.93 d.74.2.1 39700 1luaA 287 75.81 c.2.1.7,c.58.1.4 78216,78217 1qysA 106 77.66 k.41.1.1 96603 2qbuA 232 78.98 2d1sA 548 79.37 2hmvA 144 81.53 c.2.1.9 136615 1vdmA 153 82.32 c.61.1.1 119994 2eiyA 308 83.70 1q7sA 117 83.93 c.131.1.1 96055 2a9gA 418 85.21 d.126.1.4 126435 1u3dA 509 86.61 a.99.1.1,c.28.1.1 107638,107639 1np7A 489 86.73 a.99.1.1,c.28.1.1 80677,80678 1aw2A 256 87.67 c.1.1.1 28523 1wn2A 121 87.71 2bkxA 242 89.42