# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 4.54e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 2.45e-19 2is6A 680 3.14e-19 1w36B 1180 4.04e-16 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 2.30e-13 1w36C 1122 1.07e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2hjvA 163 0.07339 1fukA 165 0.1094 c.37.1.19 32409 1t5iA 172 0.1337 c.37.1.19 106450 1oywA 523 1.180 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yksA 440 1.219 c.37.1.14,c.37.1.14 123561,123562 2v1xA 591 1.670 2jgnA 185 1.724 1wviA 257 2.099 c.108.1.14 114915 2v8oA 444 2.954 1peaA 385 3.135 c.93.1.1 35662 1v25A 541 3.141 e.23.1.1 108275 3ckmA 327 3.868 1usgA 346 4.161 c.93.1.1 99864 8abp 306 4.331 1vimA 200 4.703 c.80.1.3 100758 3cssA 267 5.875 8abpA 306 5.882 c.93.1.1 35647 1pea 385 6.637 3ch7A 266 7.006 3cb6A 444 7.168 1m3sA 186 7.253 c.80.1.3 78573 1vjqA 79 7.406 k.43.1.1 100830 2bmfA 451 7.886 c.37.1.14,c.37.1.14 128791,128792 2z83A 459 8.364 2j0eA 266 8.719 1z15A 344 8.907 2vl7A 540 9.275 1tc1A 220 10.34 c.61.1.1 34083 2dxnA 274 12.80 3brqA 296 13.27 1z5zA 271 13.30 c.37.1.19 124499 2d13A 227 13.35 c.26.2.1 131121 1fs5A 266 14.44 c.124.1.1 65044 2va8A 715 15.98 1e58A 249 16.59 c.60.1.1 59262 2ioyA 283 17.00 2h4aA 325 17.42 3borA 237 17.82 2oxcA 230 17.95 3d02A 303 18.52 1vecA 206 18.71 c.37.1.19 100575 1vl1A 232 18.81 c.124.1.1 108707 2npnA 251 20.63 2gxqA 207 21.62 2dekA 265 21.84 c.90.1.1 131430 2rjoA 332 21.84 1q0uA 219 22.68 c.37.1.19 95512 2dri 271 23.71 1va0A 239 23.90 c.90.1.1 119899 1amuA 563 24.25 e.23.1.1 43351 1qdeA 224 24.75 c.37.1.19 32410 1xknA 355 24.94 d.126.1.6 115414 1o57A 291 25.11 a.4.5.40,c.61.1.1 92483,92484 2hcrA 326 26.95 1d2mA 665 27.19 c.37.1.19,c.37.1.19 32417,32418 2ahdA 165 28.59 d.159.1.7 126752 1ne7A 289 29.11 c.124.1.1 91833 2pl3A 236 29.21 1t5hX 504 29.21 e.23.1.1 106449 2qvcA 313 29.60 1ve2A 235 30.45 c.90.1.1 120008 2fqxA 318 30.82 1rkqA 282 30.95 c.108.1.10 97621 2gukA 120 31.28 2e4uA 555 31.80 1t6nA 220 31.86 c.37.1.19 106576 1gudA 288 32.50 c.93.1.1 83326 1g94A 448 32.83 b.71.1.1,c.1.8.1 65169,65170 2bw0A 329 33.02 b.46.1.1,c.65.1.1 129303,129304 2jbhA 225 33.29 2a22A 215 33.88 d.159.1.7 126025 2d1sA 548 34.02 1jeoA 180 34.21 c.80.1.3 66611 1jb0E 75 36.32 b.34.4.2 62824 2hmaA 376 37.13 1uxy 340 37.51 1qxyA 252 37.82 d.127.1.1 96565 2pi1A 334 38.46 1hgxA 183 38.76 c.61.1.1 34027 1dbqA 289 38.90 c.93.1.1 35666 1jk7A 323 39.95 d.159.1.3 63144 2rgyA 290 40.47 1jdpA 441 41.47 c.93.1.1 62906 2h88A 621 44.11 3bblA 287 44.90 1y0bA 197 46.11 c.61.1.1 122476 2fn9A 290 46.54 1w24A 182 46.59 d.159.1.7 120579 1uxyA 340 48.05 d.145.1.2,d.146.1.1 41748,41761 3bueA 79 48.62 1uteA 313 48.92 d.159.1.1 42078 1qysA 106 49.13 k.41.1.1 96603 1y89A 238 49.40 2bjbA 462 49.66 2o4cA 380 49.84 2p5mA 83 50.30 3berA 249 50.78 2yvtA 260 50.94 2g1uA 155 51.01 1wurA 220 51.55 d.96.1.1 121309 1xi3A 215 52.13 c.1.3.1 109601 1heiA 451 53.46 c.37.1.14,c.37.1.14 32463,32464 1pj5A 830 53.95 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1hskA 326 54.33 d.145.1.2,d.146.1.1 61241,61242 1ii7A 333 55.02 d.159.1.4 62415 1bykA 255 60.16 c.93.1.1 35706 1rvv1 154 61.98 3brcA 156 62.15 2driA 271 62.97 c.93.1.1 35637 2fvyA 309 63.78 c.93.1.1 134227 1aw2A 256 64.57 c.1.1.1 28523 2qbuA 232 64.97 2zfzA 79 66.28 2bkxA 242 67.31 2nzcA 86 67.91 1xviA 275 68.35 c.108.1.10 116088 2ywuA 181 71.90 2yvqA 143 72.30 1b4bA 71 72.76 d.74.2.1 39718 1mdbA 539 73.29 e.23.1.1 79008 1sfxA 109 73.38 a.4.5.50 105505 1w30A 201 73.95 c.61.1.1 114118 1hx0A 496 74.07 b.71.1.1,c.1.8.1 61346,61347 2qjtA 352 74.61 1j7jA 178 75.40 c.61.1.1 84131 1luaA 287 75.80 c.2.1.7,c.58.1.4 78216,78217 1gsa 316 75.88 2fclA 169 76.35 d.218.1.11 133273 1q7sA 117 76.65 c.131.1.1 96055 2z0mA 337 77.25 3crvA 551 77.28 2yvwA 425 78.06 1xxaA 78 79.56 d.74.2.1 39700 1k07A 263 79.62 d.157.1.1 77218 1c4oA 664 80.35 c.37.1.19,c.37.1.19 32415,32416 2dy0A 190 80.49 1g2qA 187 80.87 c.61.1.1 65117 2gmnA 274 82.48 2mbrA 340 83.28 d.145.1.2,d.146.1.1 41749,41762 1jyeA 349 83.39 c.93.1.1 67455 1vp8A 201 84.81 c.49.1.2 113947 1k4nA 192 85.46 d.32.1.5 72059 2i6uA 307 87.26 1wd5A 208 87.63 c.61.1.1 114524 1htwA 158 87.72 c.37.1.18 71083 2hy1A 280 88.20 1gs5A 258 89.37 c.73.1.2 70395 2v7bA 529 89.70