# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1pjrA	724	6.82e-20	c.37.1.19,c.37.1.19	32391,32392
2is6A	680	1.45e-19		
1pjr	724	3.52e-19		
2gk6A	624	6.29e-14		
1w36B	1180	1.17e-13	c.37.1.19,c.37.1.19,c.52.1.24	114122,114123,114124
1w36C	1122	2.78e-11	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
1fukA	165	0.1308	c.37.1.19	32409
2hjvA	163	0.1391		
1t5iA	172	0.1989	c.37.1.19	106450
1yksA	440	0.4358	c.37.1.14,c.37.1.14	123561,123562
3ch7A	266	0.9861		
3cssA	267	1.357		
1hm6A	346	1.689	a.65.1.1	18147
2jgnA	185	2.137		
2j0eA	266	2.334		
1z7lA	276	2.461		
2v8oA	444	2.507		
1dm5A	315	3.340	a.65.1.1	18186
1yiiA	320	3.457		
1oywA	523	4.733	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2bmfA	451	5.287	c.37.1.14,c.37.1.14	128791,128792
2v1xA	591	6.095		
2z83A	459	6.161		
2ri0A	234	7.247		
1vimA	200	7.676	c.80.1.3	100758
8abpA	306	7.866	c.93.1.1	35647
2hyvA	308	7.908		
2ie7A	318	8.280	a.65.1.1	137293
1axn	323	8.871		
1m3sA	186	9.012	c.80.1.3	78573
1cjbA	231	9.339	c.61.1.1	34079
1w7bA	339	9.928	a.65.1.1	114317
1heiA	451	10.53	c.37.1.14,c.37.1.14	32463,32464
1ka9H	200	10.99	c.23.16.1	77308
1n00A	321	11.73	a.65.1.1	85241
2qbuA	232	12.85		
3bblA	287	12.98		
3cb6A	444	14.18		
1vl1A	232	14.69	c.124.1.1	108707
1i4aA	318	14.80	a.65.1.1	61681
1zosA	230	15.14		
1axnA	323	15.66	a.65.1.1	18149
1tc1A	220	16.64	c.61.1.1	34083
2rgyA	290	17.39		
1w3wA	327	20.17		
1gs5A	258	20.31	c.73.1.2	70395
1g2qA	187	22.05	c.61.1.1	65117
1fyeA	229	22.46	c.23.16.4	31477
1rlkA	117	22.52	c.131.1.1	97651
2fclA	169	22.77	d.218.1.11	133273
1va0A	239	23.93	c.90.1.1	119899
1wdeA	294	23.94	c.90.1.1	114534
1fo8A	343	25.22	c.68.1.10	59927
1lj5A	379	25.30	e.1.1.1	73928
2eklA	313	26.06		
3brqA	296	28.77		
1y89A	238	28.88		
8abp	306	30.22		
2bkxA	242	31.02		
2i2wA	212	32.45		
1xtyA	120	35.66		
1q7sA	117	35.81	c.131.1.1	96055
1w24A	182	36.78	d.159.1.7	120579
2qeeA	437	37.43		
2npnA	251	37.53		
2itbA	206	37.66		
1ly1A	181	39.78	c.37.1.1	74334
1dbqA	289	41.57	c.93.1.1	35666
2ywjA	186	42.85		
1hgxA	183	43.43	c.61.1.1	34027
1wn1A	356	43.66		
1wn2A	121	44.68		
2eq5A	228	47.29		
1jysA	242	48.04	c.56.2.1	77216
1jeoA	180	48.52	c.80.1.3	66611
2dxaA	166	49.25		
1tk9A	188	50.60	c.80.1.3	107082
1m93B	245	51.14		
1h70A	255	51.66	d.126.1.3	60711
1auaA	296	52.31	a.5.3.1,c.13.1.1	16290,30882
2acyA	98	52.53	d.58.10.1	39298
1urrA	102	52.99	d.58.10.1	107998
2va8A	715	53.18		
2h3gX	268	53.54		
1an9A	340	53.71	c.4.1.2,d.16.1.3	30617,37904
2gk4A	232	55.63		
1qdlB	195	56.13	c.23.16.1	31437
2g1uA	155	57.40		
3bl6A	230	57.59		
3bojA	213	59.44		
1a3c	181	60.26		
1k9vF	201	63.17	c.23.16.1	68365
2go7A	207	66.12	c.108.1.6	135434
1v73A	342	66.53		
1koe	172	67.26		
1z2wA	192	68.16	d.159.1.7	124390
1w77A	228	68.36	c.68.1.13	120679
2vggA	528	69.03		
1xknA	355	69.40	d.126.1.6	115414
1f2vA	219	70.04	c.23.17.1	59627
1aw2A	256	70.65	c.1.1.1	28523
2dkjA	407	71.70		
1wdvA	152	72.92	d.116.1.1	114539
3boeA	210	74.37		
3brcA	156	74.47		
1odkA	235	74.51	c.56.2.1	86863
2ioyA	283	75.10		
2odtX	328	75.10		
2acy	98	75.69		
1c4oA	664	75.77	c.37.1.19,c.37.1.19	32415,32416
2nzcA	86	79.19		
1yyaA	250	81.61		
1koeA	172	83.16	d.169.1.5	42448
2vdxA	373	83.50		
1iu8A	206	84.09	c.56.4.1	71436
2gfiA	458	84.22		
1cbfA	285	85.48	c.90.1.1	35587
2dekA	265	86.27	c.90.1.1	131430
1ve2A	235	86.45	c.90.1.1	120008
1v7pA	134	86.85	d.169.1.1	108406
1ywqA	200	87.30	d.90.1.1	124162
1egiA	147	87.65	d.169.1.1	42331
1dbxA	158	87.99	d.116.1.1	40928
1z2zA	446	88.89		
3cs3A	277	89.08