# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 3.47e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 1.29e-19 2is6A 680 1.42e-19 1w36B 1180 1.08e-14 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 6.46e-14 1w36C 1122 2.10e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1fukA 165 0.02161 c.37.1.19 32409 2hjvA 163 0.1005 1t5iA 172 0.4726 c.37.1.19 106450 2v1xA 591 0.6810 1oywA 523 1.115 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yksA 440 1.221 c.37.1.14,c.37.1.14 123561,123562 2bmfA 451 1.280 c.37.1.14,c.37.1.14 128791,128792 3ch7A 266 1.821 1usgA 346 2.398 c.93.1.1 99864 3cssA 267 2.645 2v8oA 444 3.004 2z83A 459 3.480 2j0eA 266 5.476 2jgnA 185 5.480 1z15A 344 5.730 1z5zA 271 7.998 c.37.1.19 124499 1xknA 355 12.41 d.126.1.6 115414 1g2qA 187 12.80 c.61.1.1 65117 3brqA 296 13.25 3ckmA 327 13.54 1cjbA 231 15.19 c.61.1.1 34079 1hm6A 346 15.39 a.65.1.1 18147 1vimA 200 15.63 c.80.1.3 100758 1fs5A 266 17.71 c.124.1.1 65044 1tc1A 220 17.78 c.61.1.1 34083 3bblA 287 18.08 1heiA 451 18.17 c.37.1.14,c.37.1.14 32463,32464 2rgyA 290 18.18 3cb6A 444 19.93 1m3sA 186 20.72 c.80.1.3 78573 2ie7A 318 21.14 a.65.1.1 137293 1fo8A 343 23.52 c.68.1.10 59927 1an9A 340 23.92 c.4.1.2,d.16.1.3 30617,37904 2fclA 169 24.00 d.218.1.11 133273 1dm5A 315 24.32 a.65.1.1 18186 2jbhA 225 26.48 1vl1A 232 27.62 c.124.1.1 108707 1ne7A 289 28.95 c.124.1.1 91833 8abpA 306 29.89 c.93.1.1 35647 2bkxA 242 30.91 1qhtA 775 31.86 c.55.3.5,e.8.1.1 33722,43011 1qxyA 252 33.82 d.127.1.1 96565 1v7pA 134 35.37 d.169.1.1 108406 2gukA 120 37.13 1vp8A 201 37.44 c.49.1.2 113947 1yiiA 320 37.52 1axn 323 37.69 2pi1A 334 37.80 2igbA 179 38.07 2joqA 91 38.43 2ri0A 234 39.32 1i0lA 221 39.33 c.61.1.1 71096 1o70A 324 41.43 b.118.1.1,b.118.1.1 81115,81116 3borA 237 41.62 2eklA 313 41.79 1n00A 321 45.63 a.65.1.1 85241 1b4bA 71 45.86 d.74.2.1 39718 1iu8A 206 46.03 c.56.4.1 71436 1vjqA 79 46.69 k.43.1.1 100830 1hgxA 183 46.98 c.61.1.1 34027 1xxaA 78 47.20 d.74.2.1 39700 2h4aA 325 50.11 1y0bA 197 50.45 c.61.1.1 122476 2hyvA 308 52.99 2p5mA 83 53.65 1cg2A 393 54.00 c.56.5.4,d.58.19.1 33844,39360 1a3c 181 58.35 1w7bA 339 58.68 a.65.1.1 114317 2ootA 709 61.25 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2itbA 206 61.88 8abp 306 63.11 2vl7A 540 65.05 1gs5A 258 66.33 c.73.1.2 70395 1ji6A 589 66.34 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1a3cA 181 67.20 c.61.1.1 34095 2hjsA 340 67.51 c.2.1.3,d.81.1.1 136547,136548 1h70A 255 69.01 d.126.1.3 60711 2i2wA 212 69.23 1x12A 208 75.21 2dekA 265 78.34 c.90.1.1 131430 2vl6A 268 78.51 1w3wA 327 79.61 1ka9H 200 80.24 c.23.16.1 77308 1i4aA 318 81.59 a.65.1.1 61681 1olmA 403 82.30 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 3bemA 218 84.24 1va0A 239 85.75 c.90.1.1 119899 1dlcA 584 86.23 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2ovrB 445 86.33 3berA 249 86.45 2v6oA 596 86.59 1axnA 323 88.72 a.65.1.1 18149 1wdeA 294 88.98 c.90.1.1 114534 1jeoA 180 88.99 c.80.1.3 66611 1em8A 147 89.33 c.128.1.1 90457 2a9gA 418 89.62 d.126.1.4 126435