# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjrA 724 2.83e-11 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 4.98e-11 1pjr 724 5.55e-11 1w36B 1180 4.75e-06 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 7.19e-06 1w36C 1122 1.46e-05 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1fukA 165 0.1145 c.37.1.19 32409 2hjvA 163 0.3145 2hgsA 474 0.4905 c.30.1.4,d.142.1.6 31722,75997 2jgnA 185 0.9604 1usgA 346 3.028 c.93.1.1 99864 3bt7A 369 3.471 1z15A 344 3.960 1y8cA 246 4.683 c.66.1.43 116563 2v1xA 591 5.567 1rz3A 201 6.940 c.37.1.6 98132 2egxA 269 10.64 1vb5A 276 11.31 c.124.1.5 113604 1duvG 333 13.80 c.78.1.1,c.78.1.1 35228,35229 2db3A 434 13.83 1dl5A 317 14.07 c.66.1.7,d.197.1.1 64720,64721 1t5iA 172 14.93 c.37.1.19 106450 1ml4A 308 15.13 c.78.1.1,c.78.1.1 79255,79256 1pytA 94 16.21 d.58.3.1 39064 1gs5A 258 17.54 c.73.1.2 70395 3borA 237 17.59 1m0wA 491 19.49 c.30.1.4,d.142.1.6 78363,78364 2cukA 311 21.99 1omoA 322 22.54 c.2.1.13 104017 2eklA 313 23.83 1dxyA 333 24.98 c.2.1.4,c.23.12.1 30094,31354 2v8oA 444 25.10 2i4iA 417 26.66 1jg1A 235 27.05 c.66.1.7 66661 3d2lA 243 27.58 1oywA 523 27.65 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1qp8A 303 30.91 c.2.1.4,c.23.12.1 30092,31352 1u3dA 509 31.60 a.99.1.1,c.28.1.1 107638,107639 1edzA 320 31.77 c.2.1.7,c.58.1.2 30287,33935 2vhhA 405 31.78 2bmfA 451 32.23 c.37.1.14,c.37.1.14 128791,128792 1k07A 263 33.97 d.157.1.1 77218 1k4nA 192 34.37 d.32.1.5 72059 2cl5A 221 35.21 c.66.1.1 130570 1cs1A 386 35.90 c.67.1.3 34399 1wznA 252 36.33 c.66.1.43 121525 1ls1A 295 38.68 a.24.13.1,c.37.1.10 78170,78171 1p91A 269 38.75 c.66.1.33 94378 1vjqA 79 39.25 k.43.1.1 100830 1pea 385 40.19 2ef0A 301 40.93 2yxeA 215 41.51 1pcaA 95 41.80 d.58.3.1 39063 1fuiA 591 43.02 b.43.2.1,c.85.1.1 25674,35444 3brcA 156 43.82 1gmuA 143 44.39 b.107.1.1,d.58.38.1 65335,65336 1l3iA 192 45.70 c.66.1.22 77676 2o8nA 265 45.79 1gsjA 258 46.34 c.73.1.2 70397 1va0A 239 46.45 c.90.1.1 119899 2uyoA 310 46.95 1z0sA 278 47.00 e.52.1.1 124328 1peaA 385 47.26 c.93.1.1 35662 2hdoA 209 47.28 c.108.1.6 136345 1h70A 255 47.85 d.126.1.3 60711 2aeuA 374 48.70 c.67.1.8 126646 1im8A 244 49.22 c.66.1.14 66212 2gpyA 233 49.88 1zhvA 134 51.96 d.58.18.8,d.58.18.8 125109,125110 2f06A 144 52.88 d.58.18.11,d.58.18.11 132652,132653 2c2xA 281 53.15 2inbA 140 53.71 1vp8A 201 54.33 c.49.1.2 113947 1dxy 333 56.36 2oycA 306 59.80 2g76A 335 60.08 1o08A 221 60.40 c.108.1.6 86525 1sc6A 404 61.11 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2o57A 297 61.89 3cneA 175 64.87 2pbfA 227 66.72 1h1dA 221 67.13 c.66.1.1 83452 2qbuA 232 70.91 1xmxA 385 71.30 c.52.1.26 115568 1sdoA 203 72.67 c.52.1.21 98809 2g5gX 268 73.28 2qjcA 262 73.83 2bm8A 236 74.71 c.66.1.50 128771 1wv9A 94 74.83 2okcA 445 75.57 1vecA 206 75.70 c.37.1.19 100575 1e5eA 404 76.62 c.67.1.3 59265 2cftA 298 76.71 1wwkA 307 77.55 2douA 376 78.23 1o4sA 389 79.41 c.67.1.1 86620 1jztA 246 80.24 c.104.1.1 63319 2h5yA 254 80.45 3cvoA 202 81.32 1p3wA 404 82.34 c.67.1.3 87752 3b9qA 302 82.50 1rifA 282 82.53 c.37.1.23 97507 2q4eA 362 83.15 2pwyA 258 83.84 3bwyA 214 83.97 2oxcA 230 84.44 2ogyA 262 85.55 1k1xA 659 86.06 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2jfzA 255 87.34 2dgmA 466 87.40 c.67.1.6 131508 3dahA 319 87.67 3b3fA 341 87.85