# List of top-scoring protein chains for T0493.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 2.46e-31 1pjrA 724 1.48e-29 c.37.1.19,c.37.1.19 32391,32392 1uaaA 673 7.28e-27 c.37.1.19,c.37.1.19 32401,32402 2pjrB 95 1.90e-16 1qhhD 169 6.97e-16 1qhhB 273 1.47e-15 2pjrA 548 7.35e-13 c.37.1.19,c.37.1.19 32395,32396 1w36D 608 1.14e-08 c.37.1.19,c.37.1.19 114128,114129 2gk6A 624 0.000147 1w36B 1180 0.000354 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2p6nA 191 0.05180 2hjvA 163 1.216 1o7lA 262 1.444 a.4.5.8,b.40.6.2,b.40.6.2 81147,81148,81149 1b9mA 265 1.552 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2hxiA 241 1.894 2fprA 176 2.196 c.108.1.19 133919 1i7qB 193 2.858 c.23.16.1 61902 2gjfA 78 4.882 2oxfA 250 5.375 2i8aA 252 5.468 2hrdA 253 5.557 2jgnA 185 5.607 1suwA 249 5.751 e.52.1.1 106027 1z0sA 278 6.163 e.52.1.1 124328 1zjjA 263 6.198 2j0uB 374 7.126 1k1xA 659 7.184 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2cztA 167 8.833 2dyiA 162 9.510 1rxyA 253 10.01 c.56.2.1 98065 2e4jA 167 10.57 2c1lA 358 10.92 2pzoE 42 11.24 1u1gA 256 11.47 c.56.2.1 119445 1r62A 160 11.65 d.122.1.3 104816 2j0uA 374 11.92 2amhA 207 13.80 c.51.4.2 127019 1mzvA 235 15.73 c.61.1.1 91502 1vjqA 79 16.59 k.43.1.1 100830 2gclA 261 17.23 b.55.1.10 134991 2gcjA 261 20.66 b.55.1.10 134987 2dgmA 466 21.60 c.67.1.6 131508 2h32H 223 23.66 2qeqA 434 24.42 1i1qB 192 26.05 c.23.16.1 61544 1dbxA 158 27.17 d.116.1.1 40928 1zuwA 272 28.29 1s1i0 130 28.55 1rq8A 104 29.40 d.68.4.1 105056 1xeyA 466 30.48 c.67.1.6 115237 1oyiA 82 30.53 a.4.5.19 93729 1mnuH 225 30.81 b.1.1.1,b.1.1.2 20359,21351 2a40B 260 30.88 d.151.1.1 126139 1p2xA 159 32.51 a.40.1.1 104062 2v8oA 444 32.56 1o5iA 249 32.91 c.2.1.2 92499 2anpA 291 35.94 c.56.5.4 127056 3b3vA 291 36.46 2b0cA 206 36.96 c.108.1.2 127633 1y6zA 263 37.06 1lokA 291 37.50 c.56.5.4 78122 1t3qA 168 37.99 a.56.1.1,d.15.4.2 106367,106368 2dwuA 276 38.64 3b3tA 291 39.51 1pbtA 244 40.61 c.124.1.1 94416 1ve2A 235 40.86 c.90.1.1 120008 5easA 548 41.28 a.102.4.1,a.128.1.3 18852,19444 2hxyA 391 42.85 2pcnA 161 43.42 1vizA 240 43.63 c.1.4.1 100784 1fyvA 161 44.06 c.23.2.1 31127 5eatA 548 44.29 a.102.4.1,a.128.1.3 18853,19445 2yyuA 246 45.09 2z83A 459 47.89 1vh7A 265 47.98 c.1.2.1 100646 2a9dA 372 48.28 b.1.18.6,d.176.1.1 126431,126432 2c1cA 312 48.59 c.56.5.1 129630 1gpwA 253 50.98 c.1.2.1 65460 1fukA 165 51.07 c.37.1.19 32409 1rtqA 299 51.85 c.56.5.4 97819 2obbA 142 52.92 2dgkA 452 52.93 1hskA 326 53.01 d.145.1.2,d.146.1.1 61241,61242 2pezA 179 53.78 1va0A 239 54.14 c.90.1.1 119899 2a9aA 372 56.62 b.1.18.6,d.176.1.1 126427,126428 2a0nA 265 57.46 c.1.2.1 125961 1guxB 152 58.99 a.74.1.3 18389 1thfD 253 59.02 c.1.2.1 28535 2j67A 178 59.14 1q40B 219 59.18 d.17.4.2 95771 1r31A 428 60.43 d.58.20.1,d.179.1.1 96897,96898 2a9bA 372 61.03 b.1.18.6,d.176.1.1 126429,126430 1um5H 217 63.88 b.1.1.1,b.1.1.2 113302,113303 1b35A 260 63.99 b.121.4.1 23333 2bmfA 451 64.68 c.37.1.14,c.37.1.14 128791,128792 1atnD 260 65.42 d.151.1.1 41793 1vl1A 232 66.08 c.124.1.1 108707 1wtlA 108 66.30 b.1.1.1 20530 1xquA 147 67.78 d.13.1.1 115855 2hmiD 220 68.51 b.1.1.1,b.1.1.2 20275,21275 2rb4A 175 69.85 2a30A 248 69.96 1yt8A 539 71.19 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 3b35A 291 72.46 1ka9F 252 72.83 c.1.2.1 77307 1auiA 521 73.68 d.159.1.3 42085 1c07A 95 74.24 a.39.1.6 17337 1mpgA 282 74.37 a.96.1.3,d.129.1.2 18747,41296 2cs5A 119 74.88 b.36.1.1 130747 2crlA 98 76.66 1um8A 376 77.36 c.37.1.20 99580 2f07A 197 77.37 2el9A 431 78.16 2pjmA 226 78.56 2c8jA 311 78.87 1d1gA 168 79.00 c.71.1.1 34889 2iwlX 140 79.53 1v2bA 177 79.80 d.107.1.2 108279 2hjsA 340 81.12 c.2.1.3,d.81.1.1 136547,136548 2yvtA 260 82.41 1r0aH 225 82.50 b.1.1.1,b.1.1.2 104679,104680 1mimH 215 83.81 b.1.1.1,b.1.1.2 20129,21159 2nxcA 254 84.00 c.66.1.39 138739 2ax4A 198 85.55 2e2eA 177 87.58