# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 2.98e-19 1pjrA 724 1.62e-18 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 1.89e-18 1w36B 1180 2.25e-13 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 1.40e-11 1w36C 1122 2.47e-11 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 1.91e-10 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.02123 1t5iA 172 0.2555 c.37.1.19 106450 1fukA 165 0.3305 c.37.1.19 32409 2liv 344 0.7298 1usgA 346 0.8352 c.93.1.1 99864 1z15A 344 1.210 2i4iA 417 1.569 2jgnA 185 2.047 2z0mA 337 2.509 1va0A 239 3.421 c.90.1.1 119899 2fwrA 472 5.347 c.37.1.19,c.37.1.19 134253,134254 1gs5A 258 5.490 c.73.1.2 70395 1jeoA 180 5.602 c.80.1.3 66611 1tc1A 220 6.998 c.61.1.1 34083 1z2wA 192 7.112 d.159.1.7 124390 2p4gA 270 7.235 3ch7A 266 7.643 1z5zA 271 8.599 c.37.1.19 124499 1gudA 288 8.803 c.93.1.1 83326 1hp1A 516 9.121 d.114.1.1,d.159.1.2 70976,70977 1oywA 523 9.589 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wd5A 208 9.95 c.61.1.1 114524 1cbfA 285 10.20 c.90.1.1 35587 1gsjA 258 10.34 c.73.1.2 70397 3cssA 267 10.50 1uxyA 340 10.91 d.145.1.2,d.146.1.1 41748,41761 1pbeA 394 11.49 c.3.1.2,d.16.1.2 30338,37869 1w24A 182 12.13 d.159.1.7 120579 2g1uA 155 12.16 1fs5A 266 12.63 c.124.1.1 65044 2db3A 434 12.93 2j0eA 266 13.95 2fn9A 290 14.38 1ush 550 14.50 1pswA 348 14.91 c.87.1.7 88287 1pbtA 244 15.03 c.124.1.1 94416 1ne7A 289 15.06 c.124.1.1 91833 1tlfA 301 15.12 c.93.1.1 35687 1ly1A 181 15.28 c.37.1.1 74334 2eiyA 308 15.64 1d2mA 665 15.84 c.37.1.19,c.37.1.19 32417,32418 2ef0A 301 16.09 1vecA 206 16.90 c.37.1.19 100575 1xmxA 385 17.03 c.52.1.26 115568 1gca 309 17.08 2c1lA 358 17.11 2dxnA 274 17.53 1vjqA 79 18.06 k.43.1.1 100830 3d02A 303 18.37 1jdpA 441 18.44 c.93.1.1 62906 1zn8A 180 18.89 c.61.1.1 125376 2a22A 215 19.72 d.159.1.7 126025 2mbrA 340 19.75 d.145.1.2,d.146.1.1 41749,41762 1pj5A 830 20.20 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2fvyA 309 20.55 c.93.1.1 134227 1pea 385 20.78 2z6rA 265 21.61 8abpA 306 21.71 c.93.1.1 35647 1wrvA 308 22.19 2rgyA 290 22.32 2vl7A 540 22.84 2ywjA 186 22.88 1qdeA 224 23.05 c.37.1.19 32410 1v25A 541 23.63 e.23.1.1 108275 2hmaA 376 23.70 1ve2A 235 24.16 c.90.1.1 120008 2driA 271 24.28 c.93.1.1 35637 1t5hX 504 25.21 e.23.1.1 106449 1jk7A 323 25.84 d.159.1.3 63144 1amuA 563 27.05 e.23.1.1 43351 2j66A 428 27.73 2qvcA 313 28.09 1fjmA 330 29.02 d.159.1.3 42082 1l1qA 186 29.68 c.61.1.1 77653 2npnA 251 29.71 2vouA 397 31.51 1m3sA 186 32.32 c.80.1.3 78573 1vimA 200 32.58 c.80.1.3 100758 1wpnA 188 32.65 c.107.1.1 114826 1u32A 293 32.72 d.159.1.3 107631 2h3hA 313 32.77 2bkwA 385 32.87 c.67.1.3 128714 1eziA 228 33.18 c.68.1.13 34512 1c4oA 664 33.38 c.37.1.19,c.37.1.19 32415,32416 2dekA 265 33.63 c.90.1.1 131430 1y89A 238 34.37 1ka9H 200 34.52 c.23.16.1 77308 1t6nA 220 35.46 c.37.1.19 106576 1jx6A 342 36.95 c.93.1.1 67406 2ho4A 259 37.48 1uf3A 228 37.77 d.159.1.6 99317 1hgxA 183 37.89 c.61.1.1 34027 1lu4A 136 37.93 c.47.1.10 91124 2nv0A 196 38.12 c.23.16.1 138625 1pvvA 315 38.34 c.78.1.1,c.78.1.1 95190,95191 1uc8A 280 38.61 c.30.1.6,d.142.1.7 99165,99166 1in4A 334 39.18 a.4.5.11,c.37.1.20 62597,62598 1y56B 382 39.83 3brqA 296 39.97 2b8eA 273 40.92 c.108.1.7,d.220.1.1 128068,128069 1l9cA 389 41.00 c.3.1.2,d.16.1.3 77815,77816 8abp 306 41.46 2as0A 396 41.53 b.122.1.9,c.66.1.51 127227,127228 1st9A 143 41.83 c.47.1.10 98987 3c6qA 311 42.23 2qmcB 188 43.05 2r00A 336 43.38 3ckmA 327 43.80 2fsxA 148 44.32 2ioyA 283 45.89 3bqxA 150 45.95 2dri 271 46.15 2fqxA 318 46.97 1xngA 268 47.91 c.26.2.1 122186 2d13A 227 47.96 c.26.2.1 131121 1in6A 334 48.04 a.4.5.11,c.37.1.20 62601,62602 2e4uA 555 48.37 1dnpA 471 49.09 a.99.1.1,c.28.1.1 18775,31630 1b6rA 355 49.36 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 2eq5A 228 49.40 2p5mA 83 49.57 2z1mA 345 49.64 1e9rA 437 49.69 c.37.1.11 64827 1ltqA 301 49.71 c.108.1.9,c.37.1.1 78208,78209 2obbA 142 49.90 1gl6A 436 50.86 c.37.1.11 70259 1w30A 201 51.19 c.61.1.1 114118 2gukA 120 52.22 1b4bA 71 52.59 d.74.2.1 39718 1iyeA 309 53.19 e.17.1.1 83786 1jztA 246 54.36 c.104.1.1 63319 3ciwA 348 55.07 1hskA 326 56.95 d.145.1.2,d.146.1.1 61241,61242 1x31B 404 57.24 1np6A 174 57.58 c.37.1.10 85954 1wviA 257 58.38 c.108.1.14 114915 1g41A 444 58.98 c.37.1.20 32450 2blnA 305 59.29 b.46.1.1,c.65.1.1 128734,128735 1fnnA 389 59.59 a.4.5.11,c.37.1.20 16129,32426 1mdbA 539 60.02 e.23.1.1 79008 3brsA 289 61.08 2df8A 325 61.14 2hjsA 340 61.26 c.2.1.3,d.81.1.1 136547,136548 2gagB 405 64.38 1lsuA 147 65.04 c.2.1.9 74250 1jyeA 349 65.60 c.93.1.1 67455 2feaA 236 65.86 c.108.1.20 133327 1z45A 699 65.91 b.30.5.4,c.2.1.2 124427,124428 2reb 352 67.98 1gsa 316 68.61 1lk5A 229 68.68 c.124.1.4,d.58.40.1 73960,73961 2i6uA 307 68.70 1gsaA 316 70.08 c.30.1.3,d.142.1.1 31718,41477 1uxy 340 70.22 1nnwA 252 70.24 d.159.1.5 80674 1qydA 313 70.68 c.2.1.2 96583 2j4dA 525 71.01 1g2qA 187 71.13 c.61.1.1 65117 1et0A 269 71.19 e.17.1.1 43289 1x6vA 630 71.75 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2qv6A 268 71.95 2zfzA 79 72.07 1mldA 314 73.10 c.2.1.5,d.162.1.1 30122,42089 2v8oA 444 73.28 2bvfA 459 73.42 1zq6A 359 73.95 1y0bA 197 74.48 c.61.1.1 122476 1q0uA 219 74.79 c.37.1.19 95512 1xg5A 279 75.45 c.2.1.2 115277 1xxaA 78 75.60 d.74.2.1 39700 2g7zA 282 75.66 1ll2A 333 75.68 c.68.1.14 74005 2d1sA 548 75.76 2oycA 306 76.60 1omoA 322 78.02 c.2.1.13 104017 1kjqA 391 78.03 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2gz1A 366 78.17 c.2.1.3,d.81.1.1 135887,135888 2qhsA 237 78.91 2h4aA 325 78.95 2iidA 498 79.28 c.3.1.2,d.16.1.5 137426,137427 2fphX 165 79.62 1sawA 225 79.70 d.177.1.1 112050 1j7jA 178 80.44 c.61.1.1 84131 1u94A 356 80.57 c.37.1.11,d.48.1.1 107743,107744 1vicA 262 81.20 c.68.1.13 100756 2o4cA 380 82.33 2e0nA 259 82.93 2ywdA 191 83.37 2bmfA 451 83.70 c.37.1.14,c.37.1.14 128791,128792 3bueA 79 84.53 1htqA 477 85.36 d.15.9.1,d.128.1.1 71035,71036 2yvqA 143 85.52 1fmtA 314 85.95 b.46.1.1,c.65.1.1 25758,34174 3pmgA 561 86.06 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2c4nA 250 87.59 c.108.1.14 129837 1i2kA 269 88.03 e.17.1.1 90661 1qdlB 195 88.05 c.23.16.1 31437 2qwxA 231 88.67 1h70A 255 89.18 d.126.1.3 60711 2nqoB 188 89.68