# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 1.37e-19 1pjrA 724 4.23e-19 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 5.32e-19 1w36B 1180 1.68e-13 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 2.62e-12 1w36C 1122 8.95e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 4.71e-11 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.01742 1t5iA 172 0.1402 c.37.1.19 106450 1fukA 165 0.3296 c.37.1.19 32409 2i4iA 417 0.4602 2liv 344 0.8673 1usgA 346 1.028 c.93.1.1 99864 2jgnA 185 1.088 1z15A 344 2.206 2z0mA 337 2.289 1oywA 523 3.076 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1d2mA 665 3.893 c.37.1.19,c.37.1.19 32417,32418 2fwrA 472 5.594 c.37.1.19,c.37.1.19 134253,134254 1v25A 541 5.808 e.23.1.1 108275 1z2wA 192 5.991 d.159.1.7 124390 2dxnA 274 6.240 3ch7A 266 7.245 1hp1A 516 7.275 d.114.1.1,d.159.1.2 70976,70977 1pswA 348 7.304 c.87.1.7 88287 2db3A 434 7.633 1va0A 239 8.593 c.90.1.1 119899 1uxyA 340 8.700 d.145.1.2,d.146.1.1 41748,41761 1gs5A 258 8.817 c.73.1.2 70395 1c4oA 664 9.189 c.37.1.19,c.37.1.19 32415,32416 1w24A 182 9.518 d.159.1.7 120579 1ush 550 9.616 2p4gA 270 9.808 1gsjA 258 10.22 c.73.1.2 70397 1tc1A 220 10.43 c.61.1.1 34083 1tlfA 301 10.73 c.93.1.1 35687 1vjqA 79 13.01 k.43.1.1 100830 3cssA 267 13.05 1jk7A 323 13.50 d.159.1.3 63144 2g1uA 155 13.51 1vecA 206 13.98 c.37.1.19 100575 2c1lA 358 14.47 1jeoA 180 14.55 c.80.1.3 66611 1qdeA 224 14.79 c.37.1.19 32410 1pea 385 14.97 2ef0A 301 15.23 1jdpA 441 15.51 c.93.1.1 62906 1fjmA 330 15.74 d.159.1.3 42082 2mbrA 340 15.74 d.145.1.2,d.146.1.1 41749,41762 2z6rA 265 16.19 2vl7A 540 16.24 2b8eA 273 17.14 c.108.1.7,d.220.1.1 128068,128069 1u32A 293 17.32 d.159.1.3 107631 1ne7A 289 17.51 c.124.1.1 91833 1gca 309 18.16 1gudA 288 19.27 c.93.1.1 83326 1z5zA 271 19.95 c.37.1.19 124499 3bqxA 150 19.99 1fs5A 266 20.36 c.124.1.1 65044 1fmtA 314 20.47 b.46.1.1,c.65.1.1 25758,34174 1ly1A 181 20.93 c.37.1.1 74334 1zn8A 180 22.56 c.61.1.1 125376 1wd5A 208 23.00 c.61.1.1 114524 3d02A 303 23.16 8abpA 306 23.61 c.93.1.1 35647 1pj5A 830 23.72 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2fn9A 290 24.81 1t5hX 504 25.01 e.23.1.1 106449 2a22A 215 25.90 d.159.1.7 126025 1t6nA 220 26.45 c.37.1.19 106576 2j66A 428 27.54 2rgyA 290 28.32 2fvyA 309 28.40 c.93.1.1 134227 2fqxA 318 28.83 2dekA 265 28.91 c.90.1.1 131430 2ywjA 186 29.25 1lu4A 136 29.46 c.47.1.10 91124 1l1qA 186 29.59 c.61.1.1 77653 1amuA 563 30.37 e.23.1.1 43351 1wviA 257 30.50 c.108.1.14 114915 1cbfA 285 31.09 c.90.1.1 35587 1pbtA 244 32.29 c.124.1.1 94416 1pbeA 394 33.55 c.3.1.2,d.16.1.2 30338,37869 2j0eA 266 34.00 2bkwA 385 34.47 c.67.1.3 128714 1ii7A 333 35.46 d.159.1.4 62415 2eiyA 308 36.32 2as0A 396 36.41 b.122.1.9,c.66.1.51 127227,127228 1jyeA 349 36.63 c.93.1.1 67455 1y89A 238 36.76 1ka9H 200 37.51 c.23.16.1 77308 2nv0A 196 37.64 c.23.16.1 138625 3ckmA 327 37.64 2npnA 251 38.21 1xmxA 385 39.43 c.52.1.26 115568 3d2lA 243 40.97 2hmaA 376 41.06 2d1sA 548 41.54 2driA 271 41.63 c.93.1.1 35637 2ho4A 259 41.78 2vouA 397 41.90 1s8eA 333 42.35 d.159.1.4 105368 3cvjA 243 42.85 1st9A 143 43.33 c.47.1.10 98987 1xxaA 78 43.44 d.74.2.1 39700 2gagB 405 43.99 1pvvA 315 44.52 c.78.1.1,c.78.1.1 95190,95191 1ve2A 235 44.62 c.90.1.1 120008 1x31B 404 45.19 1jx6A 342 46.50 c.93.1.1 67406 2zfzA 79 46.84 2e0nA 259 47.11 2ri0A 234 48.58 1wpnA 188 48.81 c.107.1.1 114826 1eziA 228 49.05 c.68.1.13 34512 1g41A 444 50.24 c.37.1.20 32450 1q0uA 219 52.41 c.37.1.19 95512 1u94A 356 53.19 c.37.1.11,d.48.1.1 107743,107744 2p5mA 83 53.32 1wrvA 308 54.52 1hgxA 183 54.85 c.61.1.1 34027 1dnpA 471 55.01 a.99.1.1,c.28.1.1 18775,31630 2ywdA 191 55.83 2dri 271 55.93 3crvA 551 56.65 2qvcA 313 56.66 1zunA 325 56.83 c.26.2.2 125676 2e4uA 555 57.91 2qhsA 237 58.62 1w30A 201 58.64 c.61.1.1 114118 1m3sA 186 59.26 c.80.1.3 78573 2gukA 120 60.33 2r00A 336 61.08 1l9cA 389 61.67 c.3.1.2,d.16.1.3 77815,77816 2i6uA 307 62.13 1gl6A 436 62.58 c.37.1.11 70259 1hskA 326 62.79 d.145.1.2,d.146.1.1 61241,61242 2fsxA 148 63.64 2reb 352 64.50 1xngA 268 64.94 c.26.2.1 122186 2v1xA 591 65.18 1z45A 699 65.37 b.30.5.4,c.2.1.2 124427,124428 1lsuA 147 65.81 c.2.1.9 74250 3bueA 79 66.42 1g2qA 187 67.64 c.61.1.1 65117 3brqA 296 67.96 1fnnA 389 68.32 a.4.5.11,c.37.1.20 16129,32426 2feaA 236 69.77 c.108.1.20 133327 2h4aA 325 70.37 1b6rA 355 70.44 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1s95A 333 70.84 d.159.1.3 105375 2g7zA 282 71.68 2v7bA 529 72.88 1in4A 334 74.89 a.4.5.11,c.37.1.20 62597,62598 2d13A 227 75.91 c.26.2.1 131121 2h3hA 313 76.55 8abp 306 77.73 2j4dA 525 77.80 1e9rA 437 78.68 c.37.1.11 64827 2oycA 306 79.03 1jztA 246 79.20 c.104.1.1 63319 1xg5A 279 79.83 c.2.1.2 115277 3c6qA 311 80.91 2blnA 305 81.42 b.46.1.1,c.65.1.1 128734,128735 3brcA 156 81.59 1vimA 200 81.60 c.80.1.3 100758 1uxy 340 81.99 1uc8A 280 82.44 c.30.1.6,d.142.1.7 99165,99166 2iidA 498 82.85 c.3.1.2,d.16.1.5 137426,137427 1kjqA 391 83.33 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1rp0A 284 83.88 c.3.1.6 118782 1mdbA 539 84.74 e.23.1.1 79008 1y56B 382 85.72 1omoA 322 86.39 c.2.1.13 104017 1k7kA 221 86.81 c.51.4.1 72104 2r0cA 549 87.89 1ir6A 424 88.13 c.107.1.2 71342 1peaA 385 89.16 c.93.1.1 35662 1auiA 521 89.91 d.159.1.3 42085