# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 6.79e-19 1pjrA 724 2.77e-18 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 2.97e-18 1w36B 1180 1.61e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 2.68e-11 1w36C 1122 4.09e-11 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 3.04e-09 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.01240 1t5iA 172 0.05519 c.37.1.19 106450 1fukA 165 0.2809 c.37.1.19 32409 2i4iA 417 0.5809 2jgnA 185 0.6575 1oywA 523 0.9340 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2z0mA 337 1.127 1uf3A 228 2.286 d.159.1.6 99317 1vecA 206 2.550 c.37.1.19 100575 1jeoA 180 3.274 c.80.1.3 66611 2liv 344 4.286 1vjqA 79 4.439 k.43.1.1 100830 1usgA 346 4.663 c.93.1.1 99864 1gudA 288 4.843 c.93.1.1 83326 2vl7A 540 4.866 8abp 306 5.009 2db3A 434 5.854 1z15A 344 6.523 2dri 271 6.643 1pj5A 830 6.932 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1z5zA 271 7.243 c.37.1.19 124499 2z6rA 265 7.389 1m3sA 186 7.442 c.80.1.3 78573 2fn9A 290 7.518 1gs5A 258 7.662 c.73.1.2 70395 1gca 309 7.763 3brsA 289 8.086 2driA 271 8.404 c.93.1.1 35637 2fwrA 472 8.511 c.37.1.19,c.37.1.19 134253,134254 2c1lA 358 9.327 1v25A 541 9.804 e.23.1.1 108275 1vimA 200 10.26 c.80.1.3 100758 1uxyA 340 10.29 d.145.1.2,d.146.1.1 41748,41761 1cbfA 285 10.80 c.90.1.1 35587 1va0A 239 11.01 c.90.1.1 119899 1wrvA 308 12.15 1zn8A 180 12.19 c.61.1.1 125376 8abpA 306 12.40 c.93.1.1 35647 2eiyA 308 12.47 1qdeA 224 12.65 c.37.1.19 32410 2ef0A 301 12.72 1xmxA 385 12.78 c.52.1.26 115568 1hp1A 516 12.86 d.114.1.1,d.159.1.2 70976,70977 2dekA 265 13.65 c.90.1.1 131430 1tc1A 220 14.15 c.61.1.1 34083 2gukA 120 14.26 3cssA 267 14.35 3ch7A 266 15.01 1fjmA 330 15.50 d.159.1.3 42082 2mbrA 340 16.02 d.145.1.2,d.146.1.1 41749,41762 1jk7A 323 16.36 d.159.1.3 63144 1gsjA 258 16.64 c.73.1.2 70397 1pbeA 394 16.89 c.3.1.2,d.16.1.2 30338,37869 2ioyA 283 16.91 1iyeA 309 16.95 e.17.1.1 83786 1fs5A 266 17.67 c.124.1.1 65044 1t6nA 220 17.74 c.37.1.19 106576 2b8eA 273 17.99 c.108.1.7,d.220.1.1 128068,128069 2g1uA 155 18.90 1ush 550 20.10 1ihoA 283 20.12 c.26.1.4 62390 2fvyA 309 20.12 c.93.1.1 134227 2rc3A 135 21.07 1u32A 293 22.44 d.159.1.3 107631 3bqxA 150 22.79 1et0A 269 23.75 e.17.1.1 43289 3d02A 303 23.92 1x31B 404 24.48 2p5mA 83 24.90 1ne7A 289 24.96 c.124.1.1 91833 1wd5A 208 25.06 c.61.1.1 114524 2df8A 325 26.44 1q0uA 219 26.44 c.37.1.19 95512 2idbA 505 26.55 b.45.1.3,d.333.1.1 137270,137271 1lu4A 136 26.69 c.47.1.10 91124 1d2mA 665 27.55 c.37.1.19,c.37.1.19 32417,32418 1a0gA 282 27.63 e.17.1.1 43276 1pvvA 315 27.69 c.78.1.1,c.78.1.1 95190,95191 2d13A 227 28.16 c.26.2.1 131121 1amuA 563 28.43 e.23.1.1 43351 3cvjA 243 28.69 2j0eA 266 28.81 2p4gA 270 29.10 1st9A 143 29.14 c.47.1.10 98987 1c4oA 664 29.22 c.37.1.19,c.37.1.19 32415,32416 3cswA 285 29.56 2dxnA 274 29.98 1fmtA 314 30.16 b.46.1.1,c.65.1.1 25758,34174 1n7kA 234 30.75 c.1.10.1 85374 1ly1A 181 30.85 c.37.1.1 74334 2gagB 405 31.21 1qysA 106 31.25 k.41.1.1 96603 1t5hX 504 31.87 e.23.1.1 106449 1b4bA 71 32.10 d.74.2.1 39718 1i2kA 269 32.53 e.17.1.1 90661 2qvcA 313 33.47 2v1xA 591 33.68 2i6uA 307 33.85 2ri0A 234 34.25 2yvqA 143 34.64 2c2aA 258 35.44 a.30.2.1,d.122.1.3 129662,129663 1jdpA 441 35.83 c.93.1.1 62906 1l1qA 186 37.11 c.61.1.1 77653 1wcwA 261 37.53 1mdbA 539 38.59 e.23.1.1 79008 3daaA 277 39.53 e.17.1.1 43272 1moq 368 40.57 1heiA 451 41.45 c.37.1.14,c.37.1.14 32463,32464 1pswA 348 42.22 c.87.1.7 88287 2d1sA 548 42.38 1vchA 175 43.16 c.61.1.1 119980 1y56B 382 44.03 1y89A 238 44.24 1ve2A 235 44.87 c.90.1.1 120008 2ywjA 186 45.16 3borA 237 45.39 2h3hA 313 45.46 2bkxA 242 46.83 1xngA 268 46.95 c.26.2.1 122186 1id1A 153 47.83 c.2.1.9 62286 1tlfA 301 48.22 c.93.1.1 35687 2e5fA 325 48.31 2ax4A 198 48.71 3brcA 156 49.08 1zunA 325 49.16 c.26.2.2 125676 2ei9A 240 49.97 3bueA 79 49.99 1b6rA 355 50.70 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1s8eA 333 51.29 d.159.1.4 105368 1wd7A 261 51.48 c.113.1.1 114526 1wdeA 294 51.66 c.90.1.1 114534 2nrrA 159 51.90 2fqxA 318 54.04 1tjyA 316 54.31 c.93.1.1 107062 2vouA 397 54.34 3c6qA 311 54.37 1pbjA 125 56.58 d.37.1.1,d.37.1.1 94414,94415 1n2eA 300 56.80 c.26.1.4 85268 2fsxA 148 56.88 2ef7A 133 57.23 2yvwA 425 57.26 1zq6A 359 57.56 1lsuA 147 57.65 c.2.1.9 74250 1lci 550 57.66 2rgyA 290 57.73 1ka9H 200 58.73 c.23.16.1 77308 1g2qA 187 58.85 c.61.1.1 65117 1uj6A 227 59.00 c.124.1.4,d.58.40.1 107898,107899 1jx6A 342 59.61 c.93.1.1 67406 2pezA 179 59.69 1pcaA 95 60.35 d.58.3.1 39063 2nxfA 322 62.77 2obbA 142 62.93 1gmuA 143 63.53 b.107.1.1,d.58.38.1 65335,65336 2zfzA 79 63.69 1sfxA 109 64.31 a.4.5.50 105505 2qv6A 268 64.97 1dnpA 471 66.65 a.99.1.1,c.28.1.1 18775,31630 2qmcB 188 67.50 1w24A 182 67.65 d.159.1.7 120579 2v79A 135 67.82 2joqA 91 68.62 1dv2A 452 69.00 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1u0tA 307 69.14 e.52.1.1 107567 1pg4A 652 69.51 e.23.1.1 88067 1uxy 340 69.63 1ii7A 333 71.02 d.159.1.4 62415 1l9cA 389 71.33 c.3.1.2,d.16.1.3 77815,77816 1z2wA 192 71.73 d.159.1.7 124390 1yksA 440 72.93 c.37.1.14,c.37.1.14 123561,123562 2qbuA 232 73.15 1omoA 322 73.20 c.2.1.13 104017 1hgxA 183 74.60 c.61.1.1 34027 2qhsA 237 74.66 2nv0A 196 75.95 c.23.16.1 138625 1hskA 326 76.05 d.145.1.2,d.146.1.1 61241,61242 2cb0A 333 79.64 1qdlB 195 80.45 c.23.16.1 31437 2cuyA 305 80.61 2as0A 396 81.01 b.122.1.9,c.66.1.51 127227,127228 1yj7A 171 82.04 2hmcA 344 82.51 1zwzA 126 83.25 1pbtA 244 83.37 c.124.1.1 94416 1earA 147 84.97 b.107.1.1,d.58.38.1 64875,64876 1pea 385 85.09 3cs3A 277 86.17 2ev1A 222 87.20 2v7bA 529 87.22 1gsaA 316 88.42 c.30.1.3,d.142.1.1 31718,41477 2j66A 428 89.08 1xkfA 133 89.36 d.37.1.1,d.37.1.1 122077,122078