# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 4.00e-21 1pjrA 724 2.61e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 3.10e-20 1w36B 1180 1.37e-14 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36C 1122 1.38e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 1.39e-12 1w36D 608 6.55e-12 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.01376 1t5iA 172 0.1058 c.37.1.19 106450 1fukA 165 0.2853 c.37.1.19 32409 2jgnA 185 1.011 1usgA 346 1.202 c.93.1.1 99864 2liv 344 1.233 1z15A 344 2.308 1gs5A 258 2.692 c.73.1.2 70395 2i4iA 417 3.048 2z0mA 337 3.746 1vecA 206 3.826 c.37.1.19 100575 1qdeA 224 4.140 c.37.1.19 32410 2p4gA 270 4.153 1jeoA 180 5.128 c.80.1.3 66611 2j0eA 266 5.236 2fwrA 472 5.258 c.37.1.19,c.37.1.19 134253,134254 1va0A 239 5.302 c.90.1.1 119899 1z2wA 192 5.365 d.159.1.7 124390 1gsjA 258 5.698 c.73.1.2 70397 1d2mA 665 5.725 c.37.1.19,c.37.1.19 32417,32418 1vjqA 79 6.252 k.43.1.1 100830 1hp1A 516 8.137 d.114.1.1,d.159.1.2 70976,70977 1tc1A 220 8.443 c.61.1.1 34083 3ch7A 266 8.604 2fn9A 290 8.625 1w24A 182 9.211 d.159.1.7 120579 1fs5A 266 9.249 c.124.1.1 65044 1t6nA 220 9.481 c.37.1.19 106576 3cssA 267 9.583 1eziA 228 10.34 c.68.1.13 34512 1c4oA 664 11.25 c.37.1.19,c.37.1.19 32415,32416 2eiyA 308 11.40 1cbfA 285 11.88 c.90.1.1 35587 1z5zA 271 12.43 c.37.1.19 124499 1ush 550 12.94 1wd5A 208 13.39 c.61.1.1 114524 2rgyA 290 13.40 2db3A 434 13.56 1pswA 348 13.98 c.87.1.7 88287 1pj5A 830 14.32 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1ne7A 289 15.29 c.124.1.1 91833 2driA 271 15.32 c.93.1.1 35637 2ef0A 301 15.41 1oywA 523 15.43 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wrvA 308 15.68 2z6rA 265 15.97 8abp 306 16.29 2gukA 120 16.59 2zfzA 79 16.72 1m3sA 186 17.07 c.80.1.3 78573 1zn8A 180 17.40 c.61.1.1 125376 3d02A 303 17.51 1ly1A 181 18.09 c.37.1.1 74334 2j66A 428 18.54 2c1lA 358 18.59 2a22A 215 18.93 d.159.1.7 126025 1pbtA 244 19.28 c.124.1.1 94416 2b8eA 273 19.32 c.108.1.7,d.220.1.1 128068,128069 2dri 271 19.55 3bqxA 150 20.36 1pea 385 20.90 2okgA 255 21.11 1uf3A 228 21.41 d.159.1.6 99317 1vimA 200 21.65 c.80.1.3 100758 1uxyA 340 21.66 d.145.1.2,d.146.1.1 41748,41761 1y89A 238 23.49 1xmxA 385 23.81 c.52.1.26 115568 2dekA 265 25.11 c.90.1.1 131430 2ywjA 186 25.64 1tlfA 301 25.67 c.93.1.1 35687 2fvyA 309 25.80 c.93.1.1 134227 1gl6A 436 25.84 c.37.1.11 70259 1jk7A 323 26.82 d.159.1.3 63144 3brcA 156 27.58 8abpA 306 27.64 c.93.1.1 35647 1gudA 288 27.70 c.93.1.1 83326 2vl7A 540 27.89 2p5mA 83 29.25 2qvcA 313 30.00 1l1qA 186 30.28 c.61.1.1 77653 1v25A 541 30.44 e.23.1.1 108275 1lu4A 136 31.23 c.47.1.10 91124 1xbsA 149 31.24 1h99A 224 31.53 a.142.1.1,a.142.1.1 60814,60815 1ve2A 235 32.20 c.90.1.1 120008 2dxnA 274 32.28 1st9A 143 32.48 c.47.1.10 98987 1iyeA 309 32.74 e.17.1.1 83786 2r00A 336 33.59 2g1uA 155 34.18 3bueA 79 34.74 1b4bA 71 35.00 d.74.2.1 39718 3d2lA 243 35.04 3brqA 296 36.35 1u32A 293 36.83 d.159.1.3 107631 2feaA 236 37.14 c.108.1.20 133327 1fjmA 330 37.20 d.159.1.3 42082 1xxaA 78 37.56 d.74.2.1 39700 1ka9H 200 38.13 c.23.16.1 77308 1t5hX 504 39.24 e.23.1.1 106449 2obbA 142 39.39 1pbeA 394 39.54 c.3.1.2,d.16.1.2 30338,37869 2vouA 397 40.11 1vchA 175 40.39 c.61.1.1 119980 2qv6A 268 40.54 2ioyA 283 41.15 2mbrA 340 41.59 d.145.1.2,d.146.1.1 41749,41762 1amuA 563 41.69 e.23.1.1 43351 2g7zA 282 41.89 2j69A 695 41.89 3cswA 285 42.52 2nv0A 196 42.96 c.23.16.1 138625 2ax4A 198 43.68 2v79A 135 43.83 2fsxA 148 44.58 1gca 309 45.59 1lsuA 147 45.64 c.2.1.9 74250 2cuyA 305 45.75 2hjsA 340 47.24 c.2.1.3,d.81.1.1 136547,136548 2h3hA 313 47.53 1w30A 201 47.61 c.61.1.1 114118 1jdpA 441 47.62 c.93.1.1 62906 2hmaA 376 48.29 1q0uA 219 49.64 c.37.1.19 95512 1k77A 260 49.88 c.1.15.5 72096 1htqA 477 50.13 d.15.9.1,d.128.1.1 71035,71036 3ckmA 327 50.86 2omdA 154 51.86 2bmfA 451 51.92 c.37.1.14,c.37.1.14 128791,128792 1nnwA 252 53.68 d.159.1.5 80674 2eq5A 228 53.83 1l9cA 389 53.88 c.3.1.2,d.16.1.3 77815,77816 1xg5A 279 54.49 c.2.1.2 115277 1wcwA 261 55.09 1k7kA 221 55.32 c.51.4.1 72104 2bkxA 242 56.63 1u94A 356 57.37 c.37.1.11,d.48.1.1 107743,107744 1wviA 257 57.61 c.108.1.14 114915 1mdbA 539 57.80 e.23.1.1 79008 2c4nA 250 58.99 c.108.1.14 129837 2pezA 179 60.02 2df8A 325 60.36 1pbjA 125 60.56 d.37.1.1,d.37.1.1 94414,94415 3c6qA 311 60.59 1hl2A 297 60.81 c.1.10.1 83581 1hgxA 183 62.11 c.61.1.1 34027 1i2kA 269 62.73 e.17.1.1 90661 1jx6A 342 62.86 c.93.1.1 67406 1jztA 246 63.00 c.104.1.1 63319 2as0A 396 64.27 b.122.1.9,c.66.1.51 127227,127228 1kjqA 391 64.39 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1gsa 316 66.16 2ho4A 259 67.84 1b6rA 355 68.53 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 2blnA 305 68.57 b.46.1.1,c.65.1.1 128734,128735 2fphX 165 68.77 1a0gA 282 69.09 e.17.1.1 43276 2d13A 227 70.41 c.26.2.1 131121 1q5yA 85 71.47 d.58.18.4 95950 2e5fA 325 71.81 3brsA 289 72.29 3bblA 287 72.56 1sawA 225 73.39 d.177.1.1 112050 1et0A 269 73.44 e.17.1.1 43289 2yvqA 143 73.64 1e9rA 437 74.01 c.37.1.11 64827 1in4A 334 74.53 a.4.5.11,c.37.1.20 62597,62598 1jo0A 98 75.53 d.68.4.1 77140 2npnA 251 75.91 1vkiA 181 76.90 d.116.1.1 108664 1xngA 268 77.10 c.26.2.1 122186 1vljA 407 77.75 e.22.1.2 108832 3ciwA 348 78.37 1x6vA 630 79.71 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1wpnA 188 81.11 c.107.1.1 114826 1gsaA 316 81.49 c.30.1.3,d.142.1.1 31718,41477 2qmcB 188 83.48 1pvvA 315 83.93 c.78.1.1,c.78.1.1 95190,95191 2ywdA 191 84.36 2bkwA 385 85.72 c.67.1.3 128714 2cc0A 195 86.96 c.6.2.3 130209 1akoA 268 87.56 d.151.1.1 41779 2z1mA 345 87.92 2qbuA 232 88.01 1qysA 106 88.50 k.41.1.1 96603 1qgoA 264 88.54 c.92.1.2 35596 2nrrA 159 89.94