# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 6.95e-21 1pjrA 724 4.10e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 4.86e-20 1w36B 1180 2.46e-14 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36C 1122 1.45e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 2.26e-12 1w36D 608 3.67e-12 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.01007 1t5iA 172 0.1165 c.37.1.19 106450 1fukA 165 0.4558 c.37.1.19 32409 2jgnA 185 1.125 1usgA 346 1.264 c.93.1.1 99864 2liv 344 1.274 2i4iA 417 1.580 2z0mA 337 2.534 1z15A 344 2.537 2fwrA 472 3.306 c.37.1.19,c.37.1.19 134253,134254 1gs5A 258 3.389 c.73.1.2 70395 1d2mA 665 3.553 c.37.1.19,c.37.1.19 32417,32418 1qdeA 224 4.459 c.37.1.19 32410 1jeoA 180 4.576 c.80.1.3 66611 2j0eA 266 4.848 2p4gA 270 4.956 1vecA 206 6.211 c.37.1.19 100575 1c4oA 664 6.685 c.37.1.19,c.37.1.19 32415,32416 1va0A 239 6.811 c.90.1.1 119899 3ch7A 266 7.081 1pswA 348 7.122 c.87.1.7 88287 1gsjA 258 7.164 c.73.1.2 70397 1vjqA 79 7.390 k.43.1.1 100830 1hp1A 516 7.512 d.114.1.1,d.159.1.2 70976,70977 2b8eA 273 8.126 c.108.1.7,d.220.1.1 128068,128069 1z2wA 192 8.216 d.159.1.7 124390 3cssA 267 8.401 1tc1A 220 9.131 c.61.1.1 34083 2db3A 434 9.889 2fn9A 290 9.942 1fs5A 266 9.99 c.124.1.1 65044 1ush 550 10.98 1z5zA 271 11.14 c.37.1.19 124499 1t6nA 220 12.86 c.37.1.19 106576 1wd5A 208 13.13 c.61.1.1 114524 2j66A 428 13.13 1w24A 182 13.54 d.159.1.7 120579 1eziA 228 13.56 c.68.1.13 34512 2ef0A 301 13.62 1uf3A 228 13.79 d.159.1.6 99317 2rgyA 290 14.41 1cbfA 285 14.54 c.90.1.1 35587 1jk7A 323 15.00 d.159.1.3 63144 1m3sA 186 15.13 c.80.1.3 78573 1ne7A 289 16.48 c.124.1.1 91833 2zfzA 79 17.37 2driA 271 18.10 c.93.1.1 35637 8abp 306 18.18 1y89A 238 18.47 1pj5A 830 19.24 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1fjmA 330 20.29 d.159.1.3 42082 2eiyA 308 20.34 3d02A 303 20.74 1ly1A 181 20.77 c.37.1.1 74334 2dri 271 21.50 1u32A 293 21.89 d.159.1.3 107631 1pbtA 244 22.26 c.124.1.1 94416 1oywA 523 22.81 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 3brcA 156 23.20 2dxnA 274 23.31 1zn8A 180 23.53 c.61.1.1 125376 2gukA 120 23.59 2a22A 215 25.01 d.159.1.7 126025 3bqxA 150 25.54 2p5mA 83 25.63 1uxyA 340 25.82 d.145.1.2,d.146.1.1 41748,41761 1pbeA 394 26.20 c.3.1.2,d.16.1.2 30338,37869 1wrvA 308 26.26 1v25A 541 26.31 e.23.1.1 108275 1pea 385 26.37 1t5hX 504 27.90 e.23.1.1 106449 1vimA 200 28.35 c.80.1.3 100758 1b4bA 71 29.28 d.74.2.1 39718 3brqA 296 29.30 1h99A 224 29.63 a.142.1.1,a.142.1.1 60814,60815 1xmxA 385 29.65 c.52.1.26 115568 2fvyA 309 29.93 c.93.1.1 134227 1l1qA 186 30.48 c.61.1.1 77653 8abpA 306 31.72 c.93.1.1 35647 1amuA 563 31.94 e.23.1.1 43351 2c1lA 358 32.90 2okgA 255 33.16 1htqA 477 33.19 d.15.9.1,d.128.1.1 71035,71036 2hmaA 376 33.47 2ywjA 186 33.97 1gudA 288 34.50 c.93.1.1 83326 2fsxA 148 35.18 2feaA 236 35.64 c.108.1.20 133327 3bueA 79 35.97 1ve2A 235 37.34 c.90.1.1 120008 1tlfA 301 37.42 c.93.1.1 35687 2qvcA 313 37.81 2z6rA 265 38.71 1xxaA 78 39.05 d.74.2.1 39700 2r00A 336 40.02 1vchA 175 42.10 c.61.1.1 119980 2dekA 265 42.39 c.90.1.1 131430 1k7kA 221 42.50 c.51.4.1 72104 3ckmA 327 42.97 1gca 309 44.13 2vouA 397 44.33 1ka9H 200 46.55 c.23.16.1 77308 1mdbA 539 46.77 e.23.1.1 79008 1gl6A 436 47.81 c.37.1.11 70259 2hjsA 340 49.32 c.2.1.3,d.81.1.1 136547,136548 1lu4A 136 49.71 c.47.1.10 91124 2ioyA 283 49.79 1xg5A 279 50.07 c.2.1.2 115277 1jdpA 441 51.01 c.93.1.1 62906 2v79A 135 51.64 1lsuA 147 51.78 c.2.1.9 74250 2omdA 154 52.76 1w30A 201 52.96 c.61.1.1 114118 2h3hA 313 53.33 1wviA 257 55.32 c.108.1.14 114915 2obbA 142 55.42 2ax4A 198 55.58 2vl7A 540 56.18 1st9A 143 56.90 c.47.1.10 98987 1iyeA 309 57.19 e.17.1.1 83786 2nv0A 196 58.70 c.23.16.1 138625 2qv6A 268 58.74 1hgxA 183 59.74 c.61.1.1 34027 1wcwA 261 59.97 2mbrA 340 60.92 d.145.1.2,d.146.1.1 41749,41762 1xngA 268 61.67 c.26.2.1 122186 3d2lA 243 64.77 1xbsA 149 64.83 1jx6A 342 64.83 c.93.1.1 67406 2g7zA 282 65.35 2bkxA 242 66.20 2blnA 305 66.35 b.46.1.1,c.65.1.1 128734,128735 1wpnA 188 66.51 c.107.1.1 114826 1pvvA 315 66.71 c.78.1.1,c.78.1.1 95190,95191 2g1uA 155 67.03 1l9cA 389 67.55 c.3.1.2,d.16.1.3 77815,77816 2nxfA 322 68.01 1jztA 246 68.36 c.104.1.1 63319 1in4A 334 68.54 a.4.5.11,c.37.1.20 62597,62598 2qmcB 188 69.42 2nrrA 159 70.01 2d13A 227 70.18 c.26.2.1 131121 2gt1A 326 70.33 1nnwA 252 70.57 d.159.1.5 80674 1jo0A 98 71.31 d.68.4.1 77140 1k77A 260 71.70 c.1.15.5 72096 1yacA 208 72.21 c.33.1.3 31757 1ukuA 102 72.87 d.58.5.2 99533 1p1lA 102 73.30 d.58.5.2 87695 3cswA 285 73.59 2ho4A 259 74.77 1pg4A 652 75.69 e.23.1.1 88067 2eq5A 228 75.95 2yvqA 143 76.35 2df8A 325 77.01 2iidA 498 77.71 c.3.1.2,d.16.1.5 137426,137427 1sawA 225 78.42 d.177.1.1 112050 2as0A 396 78.52 b.122.1.9,c.66.1.51 127227,127228 1pbjA 125 78.54 d.37.1.1,d.37.1.1 94414,94415 1gsa 316 78.60 1q5yA 85 81.47 d.58.18.4 95950 1gsaA 316 81.60 c.30.1.3,d.142.1.1 31718,41477 1qgoA 264 82.31 c.92.1.2 35596 1kjqA 391 82.41 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2c2aA 258 82.47 a.30.2.1,d.122.1.3 129662,129663 3c6qA 311 82.81 2h4aA 325 84.27 2pezA 179 84.57 3bblA 287 84.77 1e9rA 437 85.88 c.37.1.11 64827 1y56B 382 86.23 1i2kA 269 89.28 e.17.1.1 90661 1b6rA 355 89.95 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493