# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 1.45e-21 1pjrA 724 1.11e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 1.37e-20 1w36B 1180 7.45e-15 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 5.28e-13 1w36C 1122 6.45e-13 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 2.01e-12 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.009554 1t5iA 172 0.1152 c.37.1.19 106450 1fukA 165 0.4450 c.37.1.19 32409 2jgnA 185 1.224 2i4iA 417 1.597 1usgA 346 1.621 c.93.1.1 99864 2liv 344 1.942 2z0mA 337 2.147 2fwrA 472 2.396 c.37.1.19,c.37.1.19 134253,134254 1gs5A 258 2.505 c.73.1.2 70395 1z15A 344 3.394 1d2mA 665 3.622 c.37.1.19,c.37.1.19 32417,32418 1jeoA 180 3.998 c.80.1.3 66611 1qdeA 224 4.114 c.37.1.19 32410 1va0A 239 4.947 c.90.1.1 119899 2j0eA 266 5.686 1c4oA 664 5.899 c.37.1.19,c.37.1.19 32415,32416 1hp1A 516 6.201 d.114.1.1,d.159.1.2 70976,70977 2p4gA 270 6.600 1z2wA 192 7.411 d.159.1.7 124390 1tc1A 220 7.577 c.61.1.1 34083 1cbfA 285 7.932 c.90.1.1 35587 3ch7A 266 7.963 1vjqA 79 8.109 k.43.1.1 100830 1gsjA 258 8.568 c.73.1.2 70397 1z5zA 271 8.586 c.37.1.19 124499 1vecA 206 8.752 c.37.1.19 100575 1ush 550 8.890 3cssA 267 9.294 1eziA 228 9.679 c.68.1.13 34512 2db3A 434 9.802 2fn9A 290 11.10 1fs5A 266 11.82 c.124.1.1 65044 1m3sA 186 11.87 c.80.1.3 78573 1t6nA 220 12.23 c.37.1.19 106576 1ly1A 181 12.38 c.37.1.1 74334 2rgyA 290 13.10 1w24A 182 13.10 d.159.1.7 120579 2ef0A 301 13.68 1uf3A 228 14.45 d.159.1.6 99317 1wd5A 208 14.83 c.61.1.1 114524 1pswA 348 15.62 c.87.1.7 88287 8abp 306 16.43 2b8eA 273 16.56 c.108.1.7,d.220.1.1 128068,128069 1jk7A 323 16.77 d.159.1.3 63144 2zfzA 79 16.91 1pj5A 830 17.28 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1y89A 238 18.00 2driA 271 18.63 c.93.1.1 35637 1ne7A 289 18.97 c.124.1.1 91833 2dxnA 274 20.10 2j66A 428 20.23 2p5mA 83 20.56 1fjmA 330 20.80 d.159.1.3 42082 1oywA 523 20.86 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1zn8A 180 21.55 c.61.1.1 125376 1pbeA 394 22.26 c.3.1.2,d.16.1.2 30338,37869 2dri 271 22.70 2eiyA 308 23.12 2a22A 215 23.17 d.159.1.7 126025 1uxyA 340 23.18 d.145.1.2,d.146.1.1 41748,41761 1pbtA 244 23.97 c.124.1.1 94416 3d02A 303 24.65 2gukA 120 24.96 2okgA 255 25.25 1u32A 293 25.34 d.159.1.3 107631 2fvyA 309 25.35 c.93.1.1 134227 1xmxA 385 25.38 c.52.1.26 115568 1l1qA 186 25.44 c.61.1.1 77653 3brcA 156 25.88 8abpA 306 26.42 c.93.1.1 35647 1vimA 200 26.65 c.80.1.3 100758 1wrvA 308 27.98 3bqxA 150 28.02 3bueA 79 28.03 1pea 385 28.18 1b4bA 71 29.35 d.74.2.1 39718 1k7kA 221 29.53 c.51.4.1 72104 2ywjA 186 32.04 1h99A 224 32.41 a.142.1.1,a.142.1.1 60814,60815 2c1lA 358 32.46 3brqA 296 32.61 2vl7A 540 33.02 1ve2A 235 33.49 c.90.1.1 120008 1gudA 288 34.08 c.93.1.1 83326 1tlfA 301 35.34 c.93.1.1 35687 1t5hX 504 36.20 e.23.1.1 106449 2bkxA 242 36.33 2feaA 236 36.76 c.108.1.20 133327 2ax4A 198 36.90 2z6rA 265 37.38 1amuA 563 38.44 e.23.1.1 43351 1v25A 541 38.75 e.23.1.1 108275 1w30A 201 39.33 c.61.1.1 114118 3ckmA 327 42.21 2fsxA 148 42.35 1wviA 257 43.96 c.108.1.14 114915 1xxaA 78 44.20 d.74.2.1 39700 2r00A 336 44.25 2as0A 396 45.31 b.122.1.9,c.66.1.51 127227,127228 1ka9H 200 46.39 c.23.16.1 77308 2pezA 179 46.39 2hmaA 376 46.88 2obbA 142 46.97 2qvcA 313 46.98 1gca 309 47.62 2nxfA 322 47.83 2nv0A 196 48.57 c.23.16.1 138625 1jx6A 342 49.84 c.93.1.1 67406 1gl6A 436 51.22 c.37.1.11 70259 2dekA 265 51.32 c.90.1.1 131430 2v79A 135 51.35 2eq5A 228 51.58 2ho4A 259 51.67 2d13A 227 51.79 c.26.2.1 131121 2vouA 397 52.63 1mdbA 539 53.36 e.23.1.1 79008 1iyeA 309 55.66 e.17.1.1 83786 1vchA 175 55.69 c.61.1.1 119980 1hgxA 183 56.73 c.61.1.1 34027 1ltqA 301 57.13 c.108.1.9,c.37.1.1 78208,78209 1l9cA 389 57.89 c.3.1.2,d.16.1.3 77815,77816 2g7zA 282 58.52 1lu4A 136 58.87 c.47.1.10 91124 1jdpA 441 58.88 c.93.1.1 62906 2omdA 154 58.89 1b6rA 355 58.91 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1kjqA 391 60.13 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2mbrA 340 61.51 d.145.1.2,d.146.1.1 41749,41762 2iidA 498 62.56 c.3.1.2,d.16.1.5 137426,137427 1u94A 356 64.62 c.37.1.11,d.48.1.1 107743,107744 1q0uA 219 65.56 c.37.1.19 95512 1e9rA 437 66.69 c.37.1.11 64827 1in4A 334 66.75 a.4.5.11,c.37.1.20 62597,62598 1pbjA 125 67.00 d.37.1.1,d.37.1.1 94414,94415 2g1uA 155 67.42 1k77A 260 67.52 c.1.15.5 72096 1gsa 316 68.96 2cuyA 305 69.04 1xngA 268 69.33 c.26.2.1 122186 2h3hA 313 69.43 1st9A 143 69.53 c.47.1.10 98987 2oycA 306 70.50 1yacA 208 70.81 c.33.1.3 31757 3c6qA 311 71.33 2npnA 251 71.68 1xg5A 279 72.76 c.2.1.2 115277 1gsaA 316 72.81 c.30.1.3,d.142.1.1 31718,41477 2df8A 325 73.04 3d2lA 243 73.24 2hjsA 340 73.28 c.2.1.3,d.81.1.1 136547,136548 2bkwA 385 74.09 c.67.1.3 128714 1qgoA 264 75.22 c.92.1.2 35596 2gt1A 326 76.10 1wpnA 188 76.34 c.107.1.1 114826 1nnwA 252 76.36 d.159.1.5 80674 2a1fA 247 77.33 c.73.1.3 125991 2blnA 305 78.00 b.46.1.1,c.65.1.1 128734,128735 1hl2A 297 78.52 c.1.10.1 83581 2h4aA 325 78.73 1xbsA 149 78.84 2e5fA 325 79.46 1id1A 153 81.50 c.2.1.9 62286 2fphX 165 82.11 2nrrA 159 82.37 1wcwA 261 82.44 2pfiA 164 82.67 1pvvA 315 82.79 c.78.1.1,c.78.1.1 95190,95191 1jztA 246 83.31 c.104.1.1 63319 2c2aA 258 83.91 a.30.2.1,d.122.1.3 129662,129663 1pg4A 652 84.67 e.23.1.1 88067 1lsuA 147 85.37 c.2.1.9 74250 1j7jA 178 85.89 c.61.1.1 84131 2gz1A 366 86.76 c.2.1.3,d.81.1.1 135887,135888 2ay1A 394 87.43 c.67.1.1 34357 2c4nA 250 89.67 c.108.1.14 129837 1sawA 225 89.83 d.177.1.1 112050