# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 3.13e-18 1pjrA 724 1.75e-17 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 1.75e-17 1w36B 1180 5.54e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 7.07e-11 1w36C 1122 1.61e-10 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 3.19e-09 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.05004 1t5iA 172 0.08845 c.37.1.19 106450 1fukA 165 0.1252 c.37.1.19 32409 2i4iA 417 1.496 1gs5A 258 2.001 c.73.1.2 70395 2jgnA 185 2.371 1usgA 346 2.638 c.93.1.1 99864 1gsjA 258 3.015 c.73.1.2 70397 2liv 344 3.458 1z15A 344 4.312 3ch7A 266 4.763 2ri0A 234 5.749 1z2wA 192 5.750 d.159.1.7 124390 1va0A 239 5.762 c.90.1.1 119899 1oywA 523 5.804 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1ly1A 181 6.327 c.37.1.1 74334 3cssA 267 6.463 1y89A 238 6.545 1jeoA 180 6.597 c.80.1.3 66611 2eq5A 228 6.652 1x31B 404 6.900 2e0nA 259 7.261 1cbfA 285 8.089 c.90.1.1 35587 1vjqA 79 8.393 k.43.1.1 100830 1l9cA 389 8.430 c.3.1.2,d.16.1.3 77815,77816 1gca 309 8.816 2gagB 405 9.392 2fwrA 472 9.631 c.37.1.19,c.37.1.19 134253,134254 1w24A 182 9.701 d.159.1.7 120579 2z0mA 337 11.07 2c4nA 250 11.22 c.108.1.14 129837 2dxnA 274 11.61 1tc1A 220 11.72 c.61.1.1 34083 2feaA 236 11.75 c.108.1.20 133327 2gukA 120 11.79 2fvyA 309 11.85 c.93.1.1 134227 2p5mA 83 12.66 2zfzA 79 12.73 2j0eA 266 12.78 1b4bA 71 13.02 d.74.2.1 39718 1ve2A 235 13.28 c.90.1.1 120008 8abp 306 13.61 1zn8A 180 14.10 c.61.1.1 125376 1qdlB 195 14.29 c.23.16.1 31437 1c4oA 664 14.69 c.37.1.19,c.37.1.19 32415,32416 1uc8A 280 15.12 c.30.1.6,d.142.1.7 99165,99166 1vjfA 180 16.37 d.116.1.1 100809 1ltqA 301 16.37 c.108.1.9,c.37.1.1 78208,78209 2gf3A 389 17.29 c.3.1.2,d.16.1.3 135070,135071 2nv0A 196 17.79 c.23.16.1 138625 3bueA 79 17.85 2v1xA 591 18.06 2j66A 428 18.16 1y56B 382 18.92 1vkiA 181 19.37 d.116.1.1 108664 1ka9H 200 19.64 c.23.16.1 77308 2obbA 142 20.70 2vl7A 540 20.76 2ii2A 310 21.01 2ywdA 191 22.59 8abpA 306 22.72 c.93.1.1 35647 3c8uA 208 24.13 1lu4A 136 24.26 c.47.1.10 91124 1i1qB 192 24.45 c.23.16.1 61544 1fs5A 266 24.56 c.124.1.1 65044 2eklA 313 25.20 2z6rA 265 25.86 1in0A 163 26.06 d.58.49.1,d.58.49.1 83694,83695 3brcA 156 26.26 2bkxA 242 26.74 1xm7A 195 26.80 d.159.1.8 115473 2db3A 434 26.99 2driA 271 27.11 c.93.1.1 35637 2ywjA 186 27.24 1ne7A 289 27.32 c.124.1.1 91833 1h70A 255 29.16 d.126.1.3 60711 1uf3A 228 30.72 d.159.1.6 99317 1jqgA 433 30.72 c.56.5.1,d.58.3.1 71791,71792 1wdeA 294 32.62 c.90.1.1 114534 1rrmA 386 34.84 e.22.1.2 105081 2qbuA 232 35.06 1j5yA 187 36.36 a.4.5.1,d.94.2.1 71592,71593 2cblA 305 36.46 a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1pbtA 244 36.48 c.124.1.1 94416 3brqA 296 37.07 1dbxA 158 38.25 d.116.1.1 40928 1st9A 143 39.82 c.47.1.10 98987 2hyvA 308 41.17 1xvwA 160 41.50 c.47.1.10 122387 2r00A 336 41.92 1u0tA 307 42.90 e.52.1.1 107567 1i0lA 221 43.68 c.61.1.1 71096 2dekA 265 43.93 c.90.1.1 131430 1aw2A 256 44.20 c.1.1.1 28523 1xmxA 385 44.92 c.52.1.26 115568 2dri 271 45.25 1jflA 228 45.44 c.78.2.1,c.78.2.1 71656,71657 1n00A 321 45.49 a.65.1.1 85241 1wv9A 94 46.12 1el5A 389 46.64 c.3.1.2,d.16.1.3 30369,37937 3bqxA 150 47.76 1xxaA 78 50.78 d.74.2.1 39700 1vchA 175 50.87 c.61.1.1 119980 1yiiA 320 51.45 1yksA 440 52.18 c.37.1.14,c.37.1.14 123561,123562 2c2xA 281 52.28 1vhvA 268 52.31 c.90.1.1 100704 1k9vF 201 52.91 c.23.16.1 68365 2fn9A 290 53.04 2pezA 179 53.64 2ci1A 275 53.81 1eziA 228 53.94 c.68.1.13 34512 2hszA 243 53.97 c.108.1.6 136726 1xknA 355 54.36 d.126.1.6 115414 1dm5A 315 56.08 a.65.1.1 18186 3bojA 213 56.41 2rgyA 290 56.68 1w30A 201 57.14 c.61.1.1 114118 1wdvA 152 58.63 d.116.1.1 114539 2v8qA 157 58.75 2fsxA 148 60.90 2oycA 306 61.27 1wcwA 261 62.40 1omoA 322 63.28 c.2.1.13 104017 1mpyA 307 63.30 d.32.1.3,d.32.1.3 38508,38509 2ie7A 318 63.69 a.65.1.1 137293 2z2mA 168 64.66 1l1qA 186 65.55 c.61.1.1 77653 1byrA 155 66.55 d.136.1.1 41450 3clkA 290 67.67 1g60A 260 68.84 c.66.1.11 70151 2ehzA 302 69.18 1i7qB 193 69.28 c.23.16.1 61902 1hm6A 346 69.40 a.65.1.1 18147 2p7jA 287 69.54 2okgA 255 70.42 1vicA 262 70.60 c.68.1.13 100756 2cuyA 305 71.18 1uj6A 227 71.60 c.124.1.4,d.58.40.1 107898,107899 1vimA 200 71.91 c.80.1.3 100758 1z5zA 271 71.94 c.37.1.19 124499 1d2mA 665 72.00 c.37.1.19,c.37.1.19 32417,32418 1j7jA 178 72.67 c.61.1.1 84131 2a22A 215 72.88 d.159.1.7 126025 2q7dA 346 76.43 1z5oA 242 78.18 2p5tB 253 79.00 2j4jA 226 79.67 1wl8A 189 80.74 c.23.16.1 120997 2h0aA 276 81.11 1i4aA 318 82.16 a.65.1.1 61681 2fqxA 318 82.68 1u3dA 509 82.84 a.99.1.1,c.28.1.1 107638,107639 1wwkA 307 83.17 2ioyA 283 84.47 1axn 323 84.85 1zosA 230 85.04 2ch5A 347 85.07 c.55.1.5,c.55.1.5 130453,130454 1tlfA 301 85.11 c.93.1.1 35687 2nzcA 86 85.94 1s2oA 244 86.37 c.108.1.10 118846 3brsA 289 86.50 1riiA 265 87.25 c.60.1.1 111807 2g7zA 282 88.03 1pcaA 95 89.15 d.58.3.1 39063