# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 3.86e-20 1pjrA 724 1.25e-19 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 1.50e-19 1w36B 1180 2.33e-14 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36C 1122 1.63e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 2.55e-12 1w36D 608 8.50e-12 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.03665 1t5iA 172 0.09785 c.37.1.19 106450 1fukA 165 0.4062 c.37.1.19 32409 2liv 344 2.060 2z0mA 337 2.186 2fwrA 472 2.547 c.37.1.19,c.37.1.19 134253,134254 2i4iA 417 2.591 1gs5A 258 2.773 c.73.1.2 70395 1usgA 346 2.855 c.93.1.1 99864 2jgnA 185 3.688 2p4gA 270 4.047 1oywA 523 4.339 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1z15A 344 4.735 1d2mA 665 5.575 c.37.1.19,c.37.1.19 32417,32418 1va0A 239 5.886 c.90.1.1 119899 3ch7A 266 6.749 1cbfA 285 7.335 c.90.1.1 35587 1tc1A 220 7.600 c.61.1.1 34083 2db3A 434 7.865 1gsjA 258 8.304 c.73.1.2 70397 1pj5A 830 8.742 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1v25A 541 9.484 e.23.1.1 108275 1z5zA 271 10.24 c.37.1.19 124499 3cssA 267 10.79 2b8eA 273 11.06 c.108.1.7,d.220.1.1 128068,128069 2ef0A 301 11.18 1jeoA 180 11.21 c.80.1.3 66611 1vjqA 79 11.57 k.43.1.1 100830 1hp1A 516 11.63 d.114.1.1,d.159.1.2 70976,70977 2g1uA 155 13.10 2j0eA 266 13.29 1vimA 200 14.13 c.80.1.3 100758 1c4oA 664 14.23 c.37.1.19,c.37.1.19 32415,32416 1pbeA 394 14.27 c.3.1.2,d.16.1.2 30338,37869 1ush 550 14.28 2dxnA 274 14.73 2vl7A 540 15.49 1fs5A 266 15.63 c.124.1.1 65044 1jk7A 323 16.51 d.159.1.3 63144 2a22A 215 17.45 d.159.1.7 126025 1uxyA 340 17.48 d.145.1.2,d.146.1.1 41748,41761 1gudA 288 17.97 c.93.1.1 83326 1ne7A 289 18.24 c.124.1.1 91833 2npnA 251 18.37 1ly1A 181 19.12 c.37.1.1 74334 2c1lA 358 19.16 1fjmA 330 19.33 d.159.1.3 42082 1ve2A 235 19.49 c.90.1.1 120008 1pvvA 315 20.02 c.78.1.1,c.78.1.1 95190,95191 1u32A 293 20.32 d.159.1.3 107631 1m3sA 186 20.81 c.80.1.3 78573 1zn8A 180 21.53 c.61.1.1 125376 1lu4A 136 21.97 c.47.1.10 91124 1xmxA 385 22.25 c.52.1.26 115568 1pswA 348 23.32 c.87.1.7 88287 1w24A 182 23.32 d.159.1.7 120579 1z2wA 192 23.47 d.159.1.7 124390 2fvyA 309 25.38 c.93.1.1 134227 1amuA 563 25.96 e.23.1.1 43351 2fn9A 290 26.70 2gukA 120 27.37 1wrvA 308 27.63 3bqxA 150 27.63 2j66A 428 29.50 1jdpA 441 29.64 c.93.1.1 62906 1t5hX 504 30.81 e.23.1.1 106449 2driA 271 30.97 c.93.1.1 35637 2mbrA 340 31.43 d.145.1.2,d.146.1.1 41749,41762 1xngA 268 31.51 c.26.2.1 122186 1l9cA 389 32.35 c.3.1.2,d.16.1.3 77815,77816 2ywjA 186 32.45 2d13A 227 33.26 c.26.2.1 131121 2eiyA 308 34.21 1iyeA 309 34.43 e.17.1.1 83786 1id1A 153 34.84 c.2.1.9 62286 1uf3A 228 35.07 d.159.1.6 99317 1hgxA 183 35.09 c.61.1.1 34027 1gl6A 436 36.38 c.37.1.11 70259 1nnwA 252 37.02 d.159.1.5 80674 2obbA 142 37.39 1tlfA 301 38.75 c.93.1.1 35687 2df8A 325 38.87 1in4A 334 39.93 a.4.5.11,c.37.1.20 62597,62598 1k7kA 221 40.09 c.51.4.1 72104 3ckmA 327 40.35 1gca 309 40.75 2nv0A 196 41.03 c.23.16.1 138625 3d02A 303 41.45 1y89A 238 41.62 1pea 385 42.06 1y56B 382 42.65 2p5mA 83 43.24 2oycA 306 43.32 2r00A 336 43.50 8abp 306 44.07 2ho4A 259 44.11 2hmaA 376 44.11 2e0nA 259 44.27 1in6A 334 44.51 a.4.5.11,c.37.1.20 62601,62602 3ciwA 348 45.17 2zfzA 79 45.30 1qdeA 224 45.54 c.37.1.19 32410 1z45A 699 45.61 b.30.5.4,c.2.1.2 124427,124428 1pbjA 125 45.86 d.37.1.1,d.37.1.1 94414,94415 1vchA 175 46.31 c.61.1.1 119980 1pbtA 244 46.98 c.124.1.1 94416 1i2kA 269 48.16 e.17.1.1 90661 1b6rA 355 48.64 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 3bueA 79 49.45 2pezA 179 50.65 2blnA 305 51.16 b.46.1.1,c.65.1.1 128734,128735 1mdbA 539 51.43 e.23.1.1 79008 1wpnA 188 52.51 c.107.1.1 114826 1et0A 269 53.23 e.17.1.1 43289 2ef7A 133 53.37 1wviA 257 53.47 c.108.1.14 114915 2qv6A 268 54.25 1xbsA 149 55.44 1ltqA 301 55.56 c.108.1.9,c.37.1.1 78208,78209 2gagB 405 56.14 2v79A 135 56.38 2c4nA 250 56.45 c.108.1.14 129837 2vouA 397 56.62 2v7bA 529 57.10 1st9A 143 57.14 c.47.1.10 98987 1b4bA 71 57.61 d.74.2.1 39718 1fmtA 314 57.96 b.46.1.1,c.65.1.1 25758,34174 2ax4A 198 58.04 2bkxA 242 58.19 1gsaA 316 58.47 c.30.1.3,d.142.1.1 31718,41477 2h4aA 325 60.53 1jztA 246 60.95 c.104.1.1 63319 2hjsA 340 61.35 c.2.1.3,d.81.1.1 136547,136548 2d1sA 548 62.48 1xxaA 78 63.60 d.74.2.1 39700 2feaA 236 64.41 c.108.1.20 133327 1ihoA 283 65.56 c.26.1.4 62390 2fphX 165 65.56 1gsa 316 65.66 2ijrA 300 65.97 1dnpA 471 66.59 a.99.1.1,c.28.1.1 18775,31630 1lsuA 147 67.12 c.2.1.9 74250 1np6A 174 67.85 c.37.1.10 85954 1vecA 206 68.50 c.37.1.19 100575 8abpA 306 69.17 c.93.1.1 35647 2gf3A 389 70.13 c.3.1.2,d.16.1.3 135070,135071 1uc8A 280 70.44 c.30.1.6,d.142.1.7 99165,99166 1x31B 404 72.62 2dri 271 72.74 2pfiA 164 73.30 2eq5A 228 73.84 2z6rA 265 74.20 1zq6A 359 75.09 2as0A 396 76.92 b.122.1.9,c.66.1.51 127227,127228 2i6uA 307 77.65 1dv2A 452 77.88 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1ka9H 200 78.00 c.23.16.1 77308 1el5A 389 79.26 c.3.1.2,d.16.1.3 30369,37937 1kjqA 391 79.52 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1w30A 201 79.90 c.61.1.1 114118 3d2lA 243 80.29 3brcA 156 80.63 1l6rA 227 81.61 c.108.1.10 77768 2bkwA 385 81.73 c.67.1.3 128714 1g41A 444 81.78 c.37.1.20 32450 2qvcA 313 82.00 2ioyA 283 82.17 1wzcA 249 82.50 c.108.1.10 121491 1htqA 477 82.64 d.15.9.1,d.128.1.1 71035,71036 2fi1A 190 83.86 c.108.1.3 133508 2j4dA 525 84.18 2ywdA 191 86.80 1u0tA 307 87.78 e.52.1.1 107567 1zunA 325 87.92 c.26.2.2 125676 1wcwA 261 88.66 1wd5A 208 89.14 c.61.1.1 114524