# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1pjr 724 2.72e-17 1pjrA 724 3.96e-17 c.37.1.19,c.37.1.19 32391,32392 2is6A 680 2.15e-16 1w36B 1180 3.93e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36C 1122 4.47e-10 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 2gk6A 624 1.77e-09 1w36D 608 2.57e-09 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.1993 1t5iA 172 1.455 c.37.1.19 106450 1z15A 344 1.842 1usgA 346 3.207 c.93.1.1 99864 1d3vA 323 4.688 c.42.1.1 32559 1cbfA 285 4.758 c.90.1.1 35587 2bcgG 453 5.897 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 2fwrA 472 8.250 c.37.1.19,c.37.1.19 134253,134254 1rqbA 539 9.313 a.5.7.2,c.1.10.5 105057,105058 1zrzA 364 10.30 2napA 723 10.72 b.52.2.2,c.81.1.1 26926,35334 2nx9A 464 10.80 1gl6A 436 11.15 c.37.1.11 70259 1heiA 451 11.40 c.37.1.14,c.37.1.14 32463,32464 2liv 344 12.01 2jgnA 185 12.08 1uf3A 228 13.09 d.159.1.6 99317 2ap1A 327 13.19 c.55.1.10,c.55.1.10 127108,127109 1tc1A 220 14.35 c.61.1.1 34083 1oywA 523 14.35 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2i4iA 417 14.61 1brmA 367 14.83 c.2.1.3,d.81.1.1 30030,39945 2z0mA 337 16.23 2feaA 236 16.25 c.108.1.20 133327 1nf2A 268 16.44 c.108.1.10 91849 2fn9A 290 17.54 1pj5A 830 18.32 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 3c0iA 351 18.84 1u32A 293 18.87 d.159.1.3 107631 1u94A 356 19.57 c.37.1.11,d.48.1.1 107743,107744 2okcA 445 21.27 1e9rA 437 21.39 c.37.1.11 64827 2bwnA 401 22.07 c.67.1.4 129368 1xmxA 385 22.20 c.52.1.26 115568 1xnzA 264 22.39 d.127.1.1 115673 1vg0A 650 25.66 c.3.1.3,d.16.1.6 108596,108597 1wkyA 464 25.98 b.18.1.31,c.1.8.3 120992,120993 1m3sA 186 26.29 c.80.1.3 78573 3d2lA 243 26.53 1gc5A 467 26.74 c.72.1.3 60429 1gs5A 258 26.82 c.73.1.2 70395 8abpA 306 28.17 c.93.1.1 35647 1jx6A 342 28.66 c.93.1.1 67406 2p4gA 270 28.70 2ef0A 301 29.99 1trb 320 30.66 2yvwA 425 32.14 1pswA 348 32.78 c.87.1.7 88287 1uxyA 340 33.43 d.145.1.2,d.146.1.1 41748,41761 2fphX 165 34.28 1xovA 326 34.32 b.34.11.4,c.56.5.6 122206,122207 1c4zA 358 34.56 d.148.1.1 41766 3cssA 267 34.92 1hm9A 468 35.27 b.81.1.4,c.68.1.5 65866,65867 1amuA 563 36.52 e.23.1.1 43351 2rebA 352 37.35 c.37.1.11,d.48.1.1 32282,38767 1qnf 484 38.50 2a1fA 247 38.72 c.73.1.3 125991 1k7kA 221 39.10 c.51.4.1 72104 1nnwA 252 39.13 d.159.1.5 80674 2q01A 497 39.14 1xngA 268 40.30 c.26.2.1 122186 2p11A 231 40.98 1fjmA 330 42.43 d.159.1.3 42082 1qv9A 283 42.64 c.127.1.1 96356 1tv8A 340 43.75 c.1.28.3 107352 2p8bA 369 43.96 1a0cA 438 44.65 c.1.15.3 29529 2aebA 322 45.05 c.42.1.1 126617 1i1iP 681 47.45 d.92.1.5 40297 8abp 306 48.38 2db3A 434 49.37 2mbrA 340 49.79 d.145.1.2,d.146.1.1 41749,41762 1lu4A 136 50.90 c.47.1.10 91124 1gteA 1025 51.91 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1fukA 165 54.32 c.37.1.19 32409 2qn6A 414 57.05 1twiA 434 57.52 b.49.2.3,c.1.6.1 107399,107400 2inpA 494 58.28 1o4sA 389 58.36 c.67.1.1 86620 2dekA 265 58.65 c.90.1.1 131430 3ch7A 266 58.91 1z5zA 271 59.04 c.37.1.19 124499 2eq5A 228 59.06 1ooyA 481 59.14 c.124.1.3,c.124.1.2 93388,93389 1jeoA 180 60.18 c.80.1.3 66611 2ay1A 394 61.74 c.67.1.1 34357 1htqA 477 63.18 d.15.9.1,d.128.1.1 71035,71036 2ahdA 165 64.08 d.159.1.7 126752 1jk7A 323 64.08 d.159.1.3 63144 2ch5A 347 64.33 c.55.1.5,c.55.1.5 130453,130454 1d5tA 433 64.45 c.3.1.3,d.16.1.6 30422,37986 1lt8A 406 68.16 c.1.26.1 78186 1vjqA 79 70.47 k.43.1.1 100830 1c24A 263 70.62 d.127.1.1 41148 1d2mA 665 71.18 c.37.1.19,c.37.1.19 32417,32418 1pbeA 394 71.36 c.3.1.2,d.16.1.2 30338,37869 1ji6A 589 72.40 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1efpB 252 73.84 c.26.2.3 31636 2goyA 275 74.48 1hl2A 297 76.08 c.1.10.1 83581 1dxeA 256 77.16 c.1.12.5 29310 2npnA 251 77.47 2v3aA 384 78.43 2ex0A 399 79.91 c.87.1.9 132494 1xvwA 160 80.17 c.47.1.10 122387 2ywjA 186 80.65 1hqvA 191 80.95 a.39.1.8 61160 1f1uA 323 80.97 d.32.1.3,d.32.1.3 83200,83201 1han 297 87.03 2jabA 136 87.21 2a22A 215 87.85 d.159.1.7 126025 2qwxA 231 88.47 1s95A 333 88.57 d.159.1.3 105375 1n7kA 234 89.85 c.1.10.1 85374