# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 1.00e-20 1pjrA 724 3.37e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 4.18e-20 1w36B 1180 7.64e-15 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 6.88e-13 1w36C 1122 7.05e-13 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 1.55e-12 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.01985 1t5iA 172 0.07665 c.37.1.19 106450 1fukA 165 0.3675 c.37.1.19 32409 2z0mA 337 1.888 2i4iA 417 2.004 2liv 344 2.025 2fwrA 472 2.183 c.37.1.19,c.37.1.19 134253,134254 1usgA 346 2.312 c.93.1.1 99864 2jgnA 185 2.575 1gs5A 258 3.081 c.73.1.2 70395 1z15A 344 3.855 1tc1A 220 5.864 c.61.1.1 34083 1pj5A 830 6.426 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1d2mA 665 6.514 c.37.1.19,c.37.1.19 32417,32418 2dxnA 274 6.760 1jeoA 180 7.041 c.80.1.3 66611 2db3A 434 7.184 1va0A 239 7.298 c.90.1.1 119899 3ch7A 266 7.809 1z5zA 271 7.864 c.37.1.19 124499 1vjqA 79 8.193 k.43.1.1 100830 2p4gA 270 8.430 2b8eA 273 8.528 c.108.1.7,d.220.1.1 128068,128069 1oywA 523 9.881 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 3cssA 267 10.05 1gsjA 258 10.57 c.73.1.2 70397 1uxyA 340 11.20 d.145.1.2,d.146.1.1 41748,41761 1pswA 348 11.73 c.87.1.7 88287 1hp1A 516 12.80 d.114.1.1,d.159.1.2 70976,70977 2g1uA 155 13.68 1cbfA 285 14.00 c.90.1.1 35587 1vimA 200 14.31 c.80.1.3 100758 1c4oA 664 15.71 c.37.1.19,c.37.1.19 32415,32416 2a22A 215 15.77 d.159.1.7 126025 1ush 550 16.10 1z2wA 192 16.63 d.159.1.7 124390 1w24A 182 17.76 d.159.1.7 120579 1jk7A 323 17.96 d.159.1.3 63144 1fs5A 266 18.23 c.124.1.1 65044 2ef0A 301 18.25 1v25A 541 19.44 e.23.1.1 108275 2j0eA 266 20.07 1u32A 293 20.52 d.159.1.3 107631 1ne7A 289 21.06 c.124.1.1 91833 1ly1A 181 21.48 c.37.1.1 74334 2npnA 251 21.56 2mbrA 340 21.97 d.145.1.2,d.146.1.1 41749,41762 1pbeA 394 22.00 c.3.1.2,d.16.1.2 30338,37869 2p5mA 83 22.60 1m3sA 186 22.89 c.80.1.3 78573 2vl7A 540 23.09 1fjmA 330 23.62 d.159.1.3 42082 1uf3A 228 24.60 d.159.1.6 99317 2oycA 306 25.51 2c1lA 358 25.59 1ve2A 235 27.06 c.90.1.1 120008 1qdeA 224 28.54 c.37.1.19 32410 1b4bA 71 29.04 d.74.2.1 39718 1gudA 288 29.23 c.93.1.1 83326 2d13A 227 30.02 c.26.2.1 131121 3ckmA 327 30.03 1zn8A 180 31.60 c.61.1.1 125376 1xmxA 385 32.25 c.52.1.26 115568 1id1A 153 32.32 c.2.1.9 62286 2zfzA 79 32.84 2j66A 428 33.36 2df8A 325 34.34 1pvvA 315 34.78 c.78.1.1,c.78.1.1 95190,95191 2ho4A 259 35.86 1ltqA 301 35.87 c.108.1.9,c.37.1.1 78208,78209 1xngA 268 36.06 c.26.2.1 122186 3bqxA 150 36.54 2qv6A 268 36.76 1lu4A 136 37.15 c.47.1.10 91124 2ywjA 186 37.32 2ijrA 300 37.75 3bueA 79 37.89 1y89A 238 38.31 1xxaA 78 38.42 d.74.2.1 39700 2h4aA 325 41.34 1iyeA 309 41.55 e.17.1.1 83786 2fn9A 290 41.70 1l9cA 389 41.75 c.3.1.2,d.16.1.3 77815,77816 2driA 271 42.04 c.93.1.1 35637 1hgxA 183 42.60 c.61.1.1 34027 1i2kA 269 42.75 e.17.1.1 90661 1gl6A 436 43.39 c.37.1.11 70259 1amuA 563 43.58 e.23.1.1 43351 2eiyA 308 43.86 1vecA 206 44.60 c.37.1.19 100575 2fvyA 309 45.15 c.93.1.1 134227 1pbtA 244 45.37 c.124.1.1 94416 1jdpA 441 46.81 c.93.1.1 62906 2hmaA 376 46.83 2yvwA 425 48.06 1z45A 699 48.43 b.30.5.4,c.2.1.2 124427,124428 1wrvA 308 49.98 2obbA 142 50.07 1wpnA 188 52.81 c.107.1.1 114826 2nv0A 196 53.17 c.23.16.1 138625 2e0nA 259 53.42 1h99A 224 53.97 a.142.1.1,a.142.1.1 60814,60815 2feaA 236 54.05 c.108.1.20 133327 1pea 385 54.07 1t5hX 504 54.21 e.23.1.1 106449 2gukA 120 54.76 1dnpA 471 54.91 a.99.1.1,c.28.1.1 18775,31630 1wviA 257 55.64 c.108.1.14 114915 2as0A 396 55.86 b.122.1.9,c.66.1.51 127227,127228 1tlfA 301 55.99 c.93.1.1 35687 1nnwA 252 56.05 d.159.1.5 80674 1et0A 269 58.06 e.17.1.1 43289 3ciwA 348 58.67 8abp 306 61.42 2bkwA 385 61.97 c.67.1.3 128714 1jztA 246 62.04 c.104.1.1 63319 1xbsA 149 62.38 1in6A 334 62.71 a.4.5.11,c.37.1.20 62601,62602 1b6rA 355 63.98 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1wy5A 317 65.36 c.26.2.5,d.229.1.1 121428,121429 2c4nA 250 66.45 c.108.1.14 129837 1sawA 225 66.49 d.177.1.1 112050 3d02A 303 66.60 1in4A 334 66.71 a.4.5.11,c.37.1.20 62597,62598 1gca 309 67.03 2blnA 305 67.66 b.46.1.1,c.65.1.1 128734,128735 1y56B 382 68.45 2bmfA 451 69.46 c.37.1.14,c.37.1.14 128791,128792 2r00A 336 69.60 1uc8A 280 69.70 c.30.1.6,d.142.1.7 99165,99166 2cblA 305 71.61 a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 2qmmA 197 71.69 2vouA 397 72.20 3brcA 156 72.24 1k7kA 221 73.43 c.51.4.1 72104 2j4dA 525 73.46 1vchA 175 73.84 c.61.1.1 119980 1fmtA 314 74.09 b.46.1.1,c.65.1.1 25758,34174 1gsaA 316 74.89 c.30.1.3,d.142.1.1 31718,41477 2ri0A 234 77.02 1el5A 389 77.95 c.3.1.2,d.16.1.3 30369,37937 2v79A 135 78.73 2fpnA 216 78.91 d.129.10.1 133908 1x31B 404 80.03 1w30A 201 80.10 c.61.1.1 114118 1zq6A 359 82.29 1pbjA 125 83.03 d.37.1.1,d.37.1.1 94414,94415 5eau 548 83.89 2v7bA 529 84.01 2gagB 405 84.71 1vkiA 181 84.80 d.116.1.1 108664 2bkxA 242 86.11 1wcwA 261 86.60 1gsa 316 86.67 2ax4A 198 87.11 1yacA 208 88.36 c.33.1.3 31757 1hl2A 297 88.40 c.1.10.1 83581 2fsxA 148 89.06 2cdqA 510 89.26 c.73.1.3,d.58.18.10,d.58.18.10 130290,130291,130292 3daaA 277 89.58 e.17.1.1 43272 2fphX 165 89.60 1g41A 444 89.68 c.37.1.20 32450 1ka9H 200 89.80 c.23.16.1 77308 1l6rA 227 89.98 c.108.1.10 77768