# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 8.44e-23 1pjrA 724 1.81e-22 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 2.53e-22 1w36B 1180 5.14e-16 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 3.88e-14 1w36C 1122 5.79e-14 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 5.80e-14 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.02106 1t5iA 172 0.1279 c.37.1.19 106450 1fukA 165 0.4151 c.37.1.19 32409 2i4iA 417 1.027 2z0mA 337 1.512 2fwrA 472 1.640 c.37.1.19,c.37.1.19 134253,134254 2jgnA 185 2.090 2liv 344 2.095 1usgA 346 2.686 c.93.1.1 99864 1d2mA 665 2.724 c.37.1.19,c.37.1.19 32417,32418 1oywA 523 2.875 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1z15A 344 4.689 2db3A 434 5.600 2dxnA 274 5.781 1z2wA 192 5.918 d.159.1.7 124390 1v25A 541 6.162 e.23.1.1 108275 1hp1A 516 6.465 d.114.1.1,d.159.1.2 70976,70977 1ush 550 6.810 1w24A 182 7.027 d.159.1.7 120579 2b8eA 273 7.345 c.108.1.7,d.220.1.1 128068,128069 1tc1A 220 7.714 c.61.1.1 34083 1pswA 348 8.408 c.87.1.7 88287 1jk7A 323 8.754 d.159.1.3 63144 3d02A 303 9.720 2p4gA 270 10.22 3ch7A 266 10.41 1fjmA 330 10.77 d.159.1.3 42082 3bqxA 150 10.92 1c4oA 664 11.11 c.37.1.19,c.37.1.19 32415,32416 1pj5A 830 11.18 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1gs5A 258 11.35 c.73.1.2 70395 1uxyA 340 14.11 d.145.1.2,d.146.1.1 41748,41761 1tlfA 301 16.34 c.93.1.1 35687 1z5zA 271 17.07 c.37.1.19 124499 1u32A 293 17.43 d.159.1.3 107631 1vjqA 79 17.43 k.43.1.1 100830 3cssA 267 18.02 1gsjA 258 18.09 c.73.1.2 70397 2ef0A 301 18.87 1jeoA 180 18.91 c.80.1.3 66611 1wrvA 308 20.04 1qdeA 224 20.22 c.37.1.19 32410 2eiyA 308 20.89 3ckmA 327 22.22 1wviA 257 22.40 c.108.1.14 114915 1vecA 206 22.62 c.37.1.19 100575 1va0A 239 23.53 c.90.1.1 119899 1pea 385 23.89 2vl7A 540 26.86 2z6rA 265 27.56 1fs5A 266 27.68 c.124.1.1 65044 1gudA 288 28.76 c.93.1.1 83326 1gca 309 28.76 1ne7A 289 29.91 c.124.1.1 91833 1pbtA 244 31.02 c.124.1.1 94416 2fvyA 309 31.59 c.93.1.1 134227 2a22A 215 31.84 d.159.1.7 126025 1zn8A 180 32.16 c.61.1.1 125376 1gl6A 436 32.94 c.37.1.11 70259 2rgyA 290 36.25 2mbrA 340 36.38 d.145.1.2,d.146.1.1 41749,41762 1hgxA 183 37.51 c.61.1.1 34027 1lu4A 136 39.66 c.47.1.10 91124 2d13A 227 39.96 c.26.2.1 131121 1zjcA 418 40.73 e.60.1.1 125147 2j4dA 525 41.36 1h4rA 314 42.00 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1pbeA 394 42.36 c.3.1.2,d.16.1.2 30338,37869 2j0eA 266 42.83 2fqxA 318 43.80 2hmaA 376 43.95 2feaA 236 44.03 c.108.1.20 133327 1t5hX 504 44.90 e.23.1.1 106449 1xhbA 472 45.24 b.42.2.1,c.68.1.17 115290,115291 1peaA 385 45.29 c.93.1.1 35662 1nnwA 252 45.80 d.159.1.5 80674 2d1sA 548 45.88 2npnA 251 46.53 1xmxA 385 46.69 c.52.1.26 115568 1jdpA 441 46.78 c.93.1.1 62906 2c1lA 358 47.50 1cbfA 285 48.01 c.90.1.1 35587 2eq5A 228 48.06 1l9cA 389 48.69 c.3.1.2,d.16.1.3 77815,77816 1iyeA 309 49.25 e.17.1.1 83786 1xxaA 78 49.98 d.74.2.1 39700 2ijrA 300 50.32 2g1uA 155 50.83 2dekA 265 51.25 c.90.1.1 131430 2obbA 142 51.63 1t6nA 220 51.66 c.37.1.19 106576 3cswA 285 51.91 2ri0A 234 52.94 1xo1A 291 55.35 a.60.7.1,c.120.1.2 18086,33356 1zwxA 301 55.37 d.151.1.3 125752 1k7kA 221 55.76 c.51.4.1 72104 2gukA 120 55.82 1rg9A 383 55.82 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 2h4aA 325 55.97 2yvwA 425 55.98 1pvvA 315 56.27 c.78.1.1,c.78.1.1 95190,95191 1w30A 201 57.71 c.61.1.1 114118 2j66A 428 57.76 1eziA 228 58.69 c.68.1.13 34512 2zfzA 79 59.10 1i2kA 269 59.61 e.17.1.1 90661 2gagB 405 59.74 3d2lA 243 60.01 1x31B 404 60.55 1hl2A 297 61.11 c.1.10.1 83581 1ir6A 424 61.23 c.107.1.2 71342 1ly1A 181 62.16 c.37.1.1 74334 1amuA 563 63.11 e.23.1.1 43351 1st9A 143 64.51 c.47.1.10 98987 1et0A 269 64.88 e.17.1.1 43289 1dnpA 471 65.10 a.99.1.1,c.28.1.1 18775,31630 2ei9A 240 65.30 1g5bA 221 66.73 d.159.1.3 60261 1xngA 268 66.77 c.26.2.1 122186 1zunA 325 67.31 c.26.2.2 125676 1ig3A 263 67.86 b.82.6.1,c.100.1.1 62358,62359 2ay1A 394 67.89 c.67.1.1 34357 2r00A 336 69.41 1mldA 314 69.84 c.2.1.5,d.162.1.1 30122,42089 2ahdA 165 70.77 d.159.1.7 126752 2h5yA 254 72.24 1vimA 200 72.31 c.80.1.3 100758 1uf3A 228 73.62 d.159.1.6 99317 1l1qA 186 74.40 c.61.1.1 77653 1el5A 389 74.87 c.3.1.2,d.16.1.3 30369,37937 1a0gA 282 75.10 e.17.1.1 43276 1fmtA 314 75.38 b.46.1.1,c.65.1.1 25758,34174 2qvcA 313 75.94 1m3sA 186 77.19 c.80.1.3 78573 2bb3A 221 79.79 c.90.1.1 128257 2ywjA 186 82.24 1d3vA 323 83.13 c.42.1.1 32559 2hqbA 296 83.18 1tezA 474 83.47 a.99.1.1,c.28.1.1 112409,112410 1y56B 382 83.97 2joqA 91 84.98 2p5mA 83 85.33 2v1xA 591 85.97 2ev1A 222 86.02 3biqA 467 86.08 1j7jA 178 86.74 c.61.1.1 84131 1ka9H 200 87.14 c.23.16.1 77308 1jyeA 349 87.85 c.93.1.1 67455 1z45A 699 89.84 b.30.5.4,c.2.1.2 124427,124428