# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 7.78e-21 1pjrA 724 3.34e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 3.92e-20 1w36B 1180 3.49e-14 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 1.58e-12 1w36C 1122 3.26e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 6.96e-12 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.02187 1t5iA 172 0.1096 c.37.1.19 106450 1fukA 165 0.3989 c.37.1.19 32409 2i4iA 417 1.417 2jgnA 185 1.995 2z0mA 337 2.727 1oywA 523 3.807 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2fwrA 472 4.001 c.37.1.19,c.37.1.19 134253,134254 1usgA 346 4.154 c.93.1.1 99864 2liv 344 4.214 1gs5A 258 4.396 c.73.1.2 70395 1jeoA 180 5.368 c.80.1.3 66611 2b8eA 273 5.684 c.108.1.7,d.220.1.1 128068,128069 1tc1A 220 6.936 c.61.1.1 34083 1z15A 344 7.265 1jk7A 323 7.552 d.159.1.3 63144 1hp1A 516 8.138 d.114.1.1,d.159.1.2 70976,70977 2z6rA 265 8.306 2dxnA 274 8.975 2c1lA 358 9.115 1gsjA 258 9.316 c.73.1.2 70397 1gudA 288 9.392 c.93.1.1 83326 1uxyA 340 9.411 d.145.1.2,d.146.1.1 41748,41761 2vl7A 540 9.422 1vjqA 79 9.467 k.43.1.1 100830 1v25A 541 9.490 e.23.1.1 108275 2db3A 434 9.507 2ef0A 301 10.43 1vecA 206 10.49 c.37.1.19 100575 3ch7A 266 10.73 1tlfA 301 11.07 c.93.1.1 35687 1fmtA 314 11.91 b.46.1.1,c.65.1.1 25758,34174 1z5zA 271 11.96 c.37.1.19 124499 2p4gA 270 12.20 1wrvA 308 12.41 1fjmA 330 12.79 d.159.1.3 42082 1ush 550 12.81 1u32A 293 13.30 d.159.1.3 107631 1pswA 348 13.71 c.87.1.7 88287 3cssA 267 14.20 1gca 309 14.75 1m3sA 186 14.94 c.80.1.3 78573 1pj5A 830 15.03 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 3d02A 303 15.67 2dekA 265 15.96 c.90.1.1 131430 1va0A 239 16.12 c.90.1.1 119899 2g1uA 155 17.44 2mbrA 340 17.51 d.145.1.2,d.146.1.1 41749,41762 1zn8A 180 17.77 c.61.1.1 125376 1pbtA 244 17.84 c.124.1.1 94416 2fn9A 290 18.65 1qdeA 224 19.80 c.37.1.19 32410 2eiyA 308 19.95 1d2mA 665 20.86 c.37.1.19,c.37.1.19 32417,32418 1wviA 257 21.08 c.108.1.14 114915 1iyeA 309 21.42 e.17.1.1 83786 2fvyA 309 21.56 c.93.1.1 134227 2gukA 120 21.56 1ne7A 289 21.72 c.124.1.1 91833 2ri0A 234 21.78 3brsA 289 21.90 2j0eA 266 23.37 1fs5A 266 23.94 c.124.1.1 65044 1ly1A 181 24.21 c.37.1.1 74334 2d13A 227 24.97 c.26.2.1 131121 1t6nA 220 26.99 c.37.1.19 106576 1i2kA 269 27.07 e.17.1.1 90661 3bqxA 150 27.19 2feaA 236 27.44 c.108.1.20 133327 1vimA 200 27.64 c.80.1.3 100758 1xmxA 385 27.95 c.52.1.26 115568 1eziA 228 28.57 c.68.1.13 34512 2yvwA 425 28.60 1et0A 269 29.17 e.17.1.1 43289 1cbfA 285 29.48 c.90.1.1 35587 1uf3A 228 29.97 d.159.1.6 99317 1z2wA 192 30.26 d.159.1.7 124390 2driA 271 30.27 c.93.1.1 35637 1w24A 182 30.57 d.159.1.7 120579 1pvvA 315 30.92 c.78.1.1,c.78.1.1 95190,95191 1lu4A 136 32.59 c.47.1.10 91124 1pea 385 33.48 3bueA 79 33.53 1c4oA 664 34.05 c.37.1.19,c.37.1.19 32415,32416 2df8A 325 34.70 1x31B 404 35.13 1st9A 143 35.83 c.47.1.10 98987 1amuA 563 36.10 e.23.1.1 43351 2zfzA 79 36.21 1dnpA 471 36.39 a.99.1.1,c.28.1.1 18775,31630 1xbsA 149 36.44 1wd5A 208 37.32 c.61.1.1 114524 2qvcA 313 38.26 2rgyA 290 38.48 2dri 271 40.37 2gagB 405 41.26 1pbeA 394 41.33 c.3.1.2,d.16.1.2 30338,37869 1hgxA 183 41.47 c.61.1.1 34027 1ve2A 235 41.64 c.90.1.1 120008 1nnwA 252 42.68 d.159.1.5 80674 1xxaA 78 42.89 d.74.2.1 39700 2a22A 215 43.99 d.159.1.7 126025 1jyeA 349 44.07 c.93.1.1 67455 1wdeA 294 45.27 c.90.1.1 114534 2fqxA 318 45.85 2p5mA 83 45.86 2j6pA 152 46.52 2vouA 397 46.82 1y56B 382 47.41 3c6qA 311 47.63 8abpA 306 49.04 c.93.1.1 35647 1xngA 268 49.51 c.26.2.1 122186 1hskA 326 49.74 d.145.1.2,d.146.1.1 61241,61242 1l9cA 389 49.80 c.3.1.2,d.16.1.3 77815,77816 2ev1A 222 50.16 2j4dA 525 50.27 2blnA 305 50.81 b.46.1.1,c.65.1.1 128734,128735 2fphX 165 51.35 1t5hX 504 51.44 e.23.1.1 106449 1gl6A 436 51.54 c.37.1.11 70259 2j66A 428 52.60 1y89A 238 52.75 1l1qA 186 53.65 c.61.1.1 77653 2hmaA 376 54.37 2idbA 505 54.44 b.45.1.3,d.333.1.1 137270,137271 1a0gA 282 54.59 e.17.1.1 43276 1jdpA 441 56.19 c.93.1.1 62906 1k7kA 221 56.76 c.51.4.1 72104 1moq 368 56.98 1w30A 201 57.86 c.61.1.1 114118 2h3hA 313 58.31 3cswA 285 59.64 1mdbA 539 59.73 e.23.1.1 79008 1s95A 333 60.07 d.159.1.3 105375 1lsuA 147 60.19 c.2.1.9 74250 2obbA 142 61.38 1jx6A 342 64.52 c.93.1.1 67406 2as0A 396 65.52 b.122.1.9,c.66.1.51 127227,127228 3d2lA 243 66.28 1b4bA 71 66.56 d.74.2.1 39718 1s8eA 333 67.10 d.159.1.4 105368 2r00A 336 68.84 1ii7A 333 69.54 d.159.1.4 62415 1uj6A 227 69.79 c.124.1.4,d.58.40.1 107898,107899 3daaA 277 69.98 e.17.1.1 43272 2ioyA 283 73.31 2npnA 251 73.32 2oycA 306 73.40 3ckmA 327 73.87 2i6uA 307 76.03 2ei9A 240 76.09 2eq5A 228 77.82 1g6sA 427 78.61 d.68.2.2 39584 1xo1A 291 79.78 a.60.7.1,c.120.1.2 18086,33356 8abp 306 80.16 1ka9H 200 80.46 c.23.16.1 77308 2d1sA 548 80.89 2fsxA 148 81.55 2okgA 255 81.77 1zq6A 359 82.18 2e0nA 259 82.92 1vchA 175 83.46 c.61.1.1 119980 1gsa 316 84.03 1b6rA 355 84.78 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 3ciwA 348 85.70 2hjsA 340 87.17 c.2.1.3,d.81.1.1 136547,136548 2v1xA 591 87.55 1gsaA 316 87.77 c.30.1.3,d.142.1.1 31718,41477 1qdlB 195 88.27 c.23.16.1 31437 2e5fA 325 89.54 1id1A 153 89.80 c.2.1.9 62286