# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 9.31e-21 1pjrA 724 2.26e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 2.75e-20 1w36B 1180 1.57e-14 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2gk6A 624 1.62e-12 1w36C 1122 3.00e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36D 608 6.90e-12 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.01270 1t5iA 172 0.08877 c.37.1.19 106450 1fukA 165 0.1980 c.37.1.19 32409 2jgnA 185 1.124 2i4iA 417 1.279 2z0mA 337 2.023 1oywA 523 2.590 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2liv 344 2.650 1usgA 346 3.649 c.93.1.1 99864 1gs5A 258 3.901 c.73.1.2 70395 1z15A 344 5.838 2fwrA 472 6.233 c.37.1.19,c.37.1.19 134253,134254 1vecA 206 6.364 c.37.1.19 100575 1z5zA 271 6.433 c.37.1.19 124499 2vl7A 540 6.896 1vjqA 79 7.654 k.43.1.1 100830 1uxyA 340 7.787 d.145.1.2,d.146.1.1 41748,41761 1tc1A 220 8.121 c.61.1.1 34083 2db3A 434 8.265 3ch7A 266 8.328 1gsjA 258 8.508 c.73.1.2 70397 3cssA 267 9.214 2p4gA 270 9.250 2b8eA 273 9.429 c.108.1.7,d.220.1.1 128068,128069 1qdeA 224 9.635 c.37.1.19 32410 1jeoA 180 9.728 c.80.1.3 66611 1gudA 288 9.946 c.93.1.1 83326 1va0A 239 10.04 c.90.1.1 119899 1pj5A 830 11.26 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1fs5A 266 11.40 c.124.1.1 65044 1v25A 541 11.55 e.23.1.1 108275 2z6rA 265 12.57 1uf3A 228 13.32 d.159.1.6 99317 1hp1A 516 13.49 d.114.1.1,d.159.1.2 70976,70977 2ef0A 301 13.61 2j0eA 266 13.84 2mbrA 340 14.34 d.145.1.2,d.146.1.1 41749,41762 1m3sA 186 14.48 c.80.1.3 78573 1ush 550 14.70 2dxnA 274 14.88 1jk7A 323 15.01 d.159.1.3 63144 2eiyA 308 15.06 1fjmA 330 16.11 d.159.1.3 42082 1ne7A 289 16.55 c.124.1.1 91833 1gca 309 16.56 3bqxA 150 16.60 1d2mA 665 16.89 c.37.1.19,c.37.1.19 32417,32418 1t5hX 504 17.28 e.23.1.1 106449 1wrvA 308 17.56 1u32A 293 18.15 d.159.1.3 107631 1z2wA 192 18.17 d.159.1.7 124390 1vimA 200 18.64 c.80.1.3 100758 2ri0A 234 20.51 2c1lA 358 20.86 1ly1A 181 21.07 c.37.1.1 74334 8abp 306 21.22 2g1uA 155 21.35 1w24A 182 21.67 d.159.1.7 120579 1pbeA 394 21.81 c.3.1.2,d.16.1.2 30338,37869 1pbtA 244 22.16 c.124.1.1 94416 1amuA 563 22.82 e.23.1.1 43351 2gukA 120 22.99 2zfzA 79 23.83 2fvyA 309 24.35 c.93.1.1 134227 3d02A 303 24.37 1tlfA 301 25.54 c.93.1.1 35687 1wviA 257 25.67 c.108.1.14 114915 1eziA 228 26.37 c.68.1.13 34512 1cbfA 285 26.40 c.90.1.1 35587 2e0nA 259 26.80 1i2kA 269 26.84 e.17.1.1 90661 2d1sA 548 26.91 1wd5A 208 27.40 c.61.1.1 114524 2dekA 265 27.75 c.90.1.1 131430 2feaA 236 27.84 c.108.1.20 133327 1y89A 238 28.33 2d13A 227 28.94 c.26.2.1 131121 1gl6A 436 29.60 c.37.1.11 70259 2fn9A 290 29.63 2p5mA 83 29.84 2driA 271 30.64 c.93.1.1 35637 1et0A 269 31.59 e.17.1.1 43289 1mdbA 539 31.65 e.23.1.1 79008 1xmxA 385 31.94 c.52.1.26 115568 1zn8A 180 32.13 c.61.1.1 125376 2npnA 251 32.92 1iyeA 309 33.17 e.17.1.1 83786 1pea 385 33.57 8abpA 306 33.71 c.93.1.1 35647 1t6nA 220 35.95 c.37.1.19 106576 2rgyA 290 36.19 2a22A 215 36.31 d.159.1.7 126025 2hmaA 376 36.36 1pvvA 315 36.57 c.78.1.1,c.78.1.1 95190,95191 1lu4A 136 37.91 c.47.1.10 91124 3bueA 79 38.38 3ckmA 327 38.38 1ve2A 235 38.71 c.90.1.1 120008 1b4bA 71 39.54 d.74.2.1 39718 1c4oA 664 40.28 c.37.1.19,c.37.1.19 32415,32416 1dnpA 471 41.03 a.99.1.1,c.28.1.1 18775,31630 1fmtA 314 41.41 b.46.1.1,c.65.1.1 25758,34174 2fphX 165 42.23 1xngA 268 44.73 c.26.2.1 122186 1pswA 348 45.63 c.87.1.7 88287 1hgxA 183 45.75 c.61.1.1 34027 1l9cA 389 46.29 c.3.1.2,d.16.1.3 77815,77816 1x31B 404 46.85 1q0uA 219 47.73 c.37.1.19 95512 2dri 271 47.76 3cvjA 243 48.28 1j7jA 178 48.51 c.61.1.1 84131 2fqxA 318 49.25 1lsuA 147 50.33 c.2.1.9 74250 1jdpA 441 50.64 c.93.1.1 62906 2df8A 325 50.66 2j66A 428 50.82 2idbA 505 52.39 b.45.1.3,d.333.1.1 137270,137271 2qvcA 313 52.51 1hskA 326 52.58 d.145.1.2,d.146.1.1 61241,61242 2ho4A 259 53.51 1a0gA 282 54.08 e.17.1.1 43276 2as0A 396 54.69 b.122.1.9,c.66.1.51 127227,127228 2ywjA 186 54.88 1moq 368 54.93 2gagB 405 55.15 2oycA 306 55.32 3brcA 156 55.83 1vchA 175 59.97 c.61.1.1 119980 3crvA 551 60.17 2fsxA 148 60.73 1jx6A 342 60.81 c.93.1.1 67406 1st9A 143 61.90 c.47.1.10 98987 1e9rA 437 61.97 c.37.1.11 64827 1jztA 246 62.46 c.104.1.1 63319 1sawA 225 63.45 d.177.1.1 112050 1xxaA 78 64.69 d.74.2.1 39700 2blnA 305 64.82 b.46.1.1,c.65.1.1 128734,128735 2vouA 397 65.53 2h3hA 313 66.21 1gsaA 316 66.22 c.30.1.3,d.142.1.1 31718,41477 3brqA 296 66.84 2eq5A 228 68.29 2v8oA 444 70.06 2i6uA 307 71.10 1xo1A 291 72.98 a.60.7.1,c.120.1.2 18086,33356 1yksA 440 73.16 c.37.1.14,c.37.1.14 123561,123562 1zq6A 359 73.24 1zwxA 301 73.41 d.151.1.3 125752 1lci 550 73.92 1w30A 201 74.18 c.61.1.1 114118 3d2lA 243 74.53 3cswA 285 74.89 2v1xA 591 75.64 1gsa 316 76.35 2j4dA 525 77.31 2v7bA 529 77.57 2bkwA 385 77.83 c.67.1.3 128714 1wdeA 294 79.20 c.90.1.1 114534 1el5A 389 79.29 c.3.1.2,d.16.1.3 30369,37937 1nnwA 252 79.42 d.159.1.5 80674 1uj6A 227 80.07 c.124.1.4,d.58.40.1 107898,107899 2p7jA 287 80.57 1pg4A 652 80.70 e.23.1.1 88067 2qv6A 268 82.18 2r00A 336 82.45 2h4aA 325 82.56 2c4nA 250 83.68 c.108.1.14 129837 1hl2A 297 84.24 c.1.10.1 83581 1k7kA 221 84.39 c.51.4.1 72104 1uxy 340 85.07 1b6rA 355 86.70 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1ka9H 200 86.99 c.23.16.1 77308 2v8qA 157 88.20 3brsA 289 88.34 2bmfA 451 88.72 c.37.1.14,c.37.1.14 128791,128792 2ioyA 283 88.95 1l7mA 211 89.02 c.108.1.4 73664 1ii7A 333 89.99 d.159.1.4 62415