# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2is6A 680 2.78e-21 1pjrA 724 5.30e-20 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 7.01e-20 2gk6A 624 2.09e-13 1w36C 1122 1.27e-12 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1w36B 1180 1.28e-12 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1w36D 608 5.90e-12 c.37.1.19,c.37.1.19 114128,114129 2hjvA 163 0.02007 1t5iA 172 0.07589 c.37.1.19 106450 1fukA 165 0.08458 c.37.1.19 32409 3cssA 267 2.096 1gs5A 258 2.175 c.73.1.2 70395 3ch7A 266 2.349 2ri0A 234 2.492 1gsjA 258 3.757 c.73.1.2 70397 1z2wA 192 4.194 d.159.1.7 124390 2i4iA 417 4.565 2j0eA 266 5.777 2rgyA 290 6.198 2e0nA 259 7.269 1y89A 238 7.417 2jgnA 185 7.491 1w24A 182 8.237 d.159.1.7 120579 1cbfA 285 8.375 c.90.1.1 35587 1pbtA 244 9.230 c.124.1.1 94416 1c4oA 664 9.323 c.37.1.19,c.37.1.19 32415,32416 2c4nA 250 10.86 c.108.1.14 129837 1jeoA 180 10.92 c.80.1.3 66611 1yksA 440 11.21 c.37.1.14,c.37.1.14 123561,123562 2eq5A 228 11.51 1xmxA 385 12.48 c.52.1.26 115568 1l9cA 389 12.58 c.3.1.2,d.16.1.3 77815,77816 1qdlB 195 12.92 c.23.16.1 31437 2gf3A 389 13.03 c.3.1.2,d.16.1.3 135070,135071 1ka9H 200 13.72 c.23.16.1 77308 1hm6A 346 13.87 a.65.1.1 18147 1ly1A 181 13.88 c.37.1.1 74334 3brqA 296 14.07 2r00A 336 16.34 2bkxA 242 16.87 2ywjA 186 17.61 1jflA 228 19.61 c.78.2.1,c.78.2.1 71656,71657 1h70A 255 20.00 d.126.1.3 60711 1f2vA 219 20.47 c.23.17.1 59627 2g1uA 155 22.20 1zosA 230 22.47 2bmfA 451 22.56 c.37.1.14,c.37.1.14 128791,128792 2p7jA 287 25.10 2afrA 231 26.96 1vkiA 181 27.66 d.116.1.1 108664 1z5oA 242 27.98 1zn8A 180 30.13 c.61.1.1 125376 3brcA 156 30.13 2z0mA 337 30.39 1ed1A 135 31.16 a.61.1.1 18130 1tc1A 220 31.44 c.61.1.1 34083 2db3A 434 31.92 2hyvA 308 32.92 1lj5A 379 33.60 e.1.1.1 73928 1vjfA 180 35.34 d.116.1.1 100809 2nv0A 196 36.37 c.23.16.1 138625 1heiA 451 36.75 c.37.1.14,c.37.1.14 32463,32464 1yiiA 320 37.48 1n00A 321 38.20 a.65.1.1 85241 2fwrA 472 38.29 c.37.1.19,c.37.1.19 134253,134254 1k9vF 201 38.84 c.23.16.1 68365 2ywdA 191 39.31 2q7dA 346 39.46 3cgxA 242 39.77 2go7A 207 40.12 c.108.1.6 135434 2gukA 120 42.47 2ef0A 301 44.15 1d2mA 665 44.17 c.37.1.19,c.37.1.19 32417,32418 3bojA 213 44.53 2z6rA 265 45.02 2npnA 251 46.45 2j4jA 226 48.82 2abwA 227 49.68 c.23.16.1 126535 2v8oA 444 49.70 2h0aA 276 50.41 2a22A 215 50.93 d.159.1.7 126025 2dekA 265 51.84 c.90.1.1 131430 1ou0A 207 52.22 c.23.17.1 93536 3cs3A 277 52.46 2ioyA 283 54.51 8abp 306 54.72 2as0A 396 57.09 b.122.1.9,c.66.1.51 127227,127228 1mb4A 370 57.21 c.2.1.3,d.81.1.1 78908,78909 1ve2A 235 57.40 c.90.1.1 120008 1jqgA 433 57.47 c.56.5.1,d.58.3.1 71791,71792 1vl1A 232 57.79 c.124.1.1 108707 2bkdN 134 57.94 2qbuA 232 58.63 1f0cA 305 58.84 e.1.1.1 42676 1i7qB 193 59.49 c.23.16.1 61902 1vjrA 271 60.24 c.108.1.14 100832 2fi1A 190 60.28 c.108.1.3 133508 1dm5A 315 60.77 a.65.1.1 18186 1g2qA 187 60.89 c.61.1.1 65117 1axn 323 61.58 1vchA 175 62.40 c.61.1.1 119980 1vimA 200 63.20 c.80.1.3 100758 2eklA 313 64.67 2ie7A 318 64.67 a.65.1.1 137293 1z5nA 242 65.81 1vqqA 646 66.23 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2hjsA 340 66.38 c.2.1.3,d.81.1.1 136547,136548 1m93B 245 66.60 1rxyA 253 67.25 c.56.2.1 98065 1l1qA 186 68.01 c.61.1.1 77653 1fyeA 229 68.28 c.23.16.4 31477 1tk9A 188 68.72 c.80.1.3 107082 1a7cA 379 68.99 e.1.1.1 42660 2cukA 311 70.58 2gagB 405 70.81 8abpA 306 71.31 c.93.1.1 35647 2jbhA 225 71.66 1xm7A 195 72.69 d.159.1.8 115473 3bblA 287 73.36 1i1qB 192 73.73 c.23.16.1 61544 2b82A 211 74.35 c.108.1.12 128057 2c2xA 281 75.76 1wl8A 189 76.69 c.23.16.1 120997 2oycA 306 76.71 3cfsB 414 77.08 3bl6A 230 79.26 3boeA 210 79.92 1w7bA 339 80.64 a.65.1.1 114317 1va0A 239 83.55 c.90.1.1 119899 1z7yA 322 83.82 c.79.1.1 124679 1vmiA 355 83.83 c.77.1.5 113678 1dbxA 158 84.61 d.116.1.1 40928 2v1xA 591 86.52 1jqoA 970 87.76 c.1.12.3 77160 1dbqA 289 87.93 c.93.1.1 35666 1m6jA 261 87.95 c.1.1.1 78693 1vmkA 277 88.26 c.56.2.1 113680 1i4aA 318 89.18 a.65.1.1 61681 1usyA 275 89.94 d.104.1.1 113422